Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04974 ATGGCAAATAAAGCTTCTCTATGCTTCTTGTTCCTCTCTTTTCTCATCTTCTTCTGTTCTGGAAACAATGCATTTTCAACTTTTTCAGGAACCAGATTCCTTAAAAATAGCAAAATCTCAAAATCTCGGATTCAGTCTTCTGTAACAGATCATAAGAAGATTTGGAGAATTCTACAAGACACAGGTTTCCCTACAAATCCAGCATCAACTACACCAGCCATAATCACAGTTCCATCAACCAATCCTGTTCCAGTTTCACCAACAAATACTGTTCCTTCTACTACACCACCTGTTTCATCAGCACCACCAACAAATCCAGCAAATACACCAGTACCTGTTACAAATCCTGTTACAGCTCCTATAACAGTTCCAGGAACAAACCCTGTGAGTTCTATTCCACCACCAGCACCAATATCAGGAACAGGAACAGTTCCTGTGACAAATCCTCCTCCTACAAGCACAAATCCTCAACCTTCTCAAGGAGGAGGTAGTTGGTGTGTGGCTAAACCTGGAACACCACAAACTACACTACAGACAGCATTGGATTATGCTTGTGGAAAAGGTGCTGATTGTTCACAGATACAACAAGGTGCAAGCTGTTATAATCCAAATTCACTTCAAAATCATGCTTCTTTTGCTTTCAATAGTTACTACCAAAAGAATCCTGCGGCTACTAGCTGTGACTTTGGAGGGGTTGCTGCTATTGTTAGCATAAATCCTAGTTCTGGAACTTGCATCTTCCCATCATCTTCAGGAGGAGCAGGCACACCCGCCGGCGGGGGCTCTGGTGGTGGTACTACTTCACCTTCATTTGGTTTGGGGCCTCAAAGCTCTCCACTGGATTCCTCTCATTCAACTGGCCTGAGACCTTTCATAAGCTGCATGGTTCTGGTGACATTATTTGTCAGTGGAAAACTCTGTATGAGTCCATAG 933 0.4309 MANKASLCFLFLSFLIFFCSGNNAFSTFSGTRFLKNSKISKSRIQSSVTDHKKIWRILQDTGFPTNPASTTPAIITVPSTNPVPVSPTNTVPSTTPPVSSAPPTNPANTPVPVTNPVTAPITVPGTNPVSSIPPPAPISGTGTVPVTNPPPTSTNPQPSQGGGSWCVAKPGTPQTTLQTALDYACGKGADCSQIQQGASCYNPNSLQNHASFAFNSYYQKNPAATSCDFGGVAAIVSINPSSGTCIFPSSSGGAGTPAGGGSGGGTTSPSFGLGPQSSPLDSSHSTGLRPFISCMVLVTLFVSGKLCMSP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04974 310 Gene3D - 162 250 - -
Trre13g04974 310 MobiDBLite consensus disorder prediction 127 165 - -
Trre13g04974 310 MobiDBLite consensus disorder prediction 256 282 - -
Trre13g04974 310 FunFam Glucan endo-1,3-beta-glucosidase 4 159 251 - -
Trre13g04974 310 MobiDBLite consensus disorder prediction 75 95 - -
Trre13g04974 310 MobiDBLite consensus disorder prediction 75 110 - -
Trre13g04974 310 Pfam X8 domain 165 233 IPR012946 -
Trre13g04974 310 MobiDBLite consensus disorder prediction 261 282 - -
Trre13g04974 310 SMART X8_cls 164 247 IPR012946 -
Trre13g04974 310 MobiDBLite consensus disorder prediction 96 110 - -
Trre13g04974 310 PANTHER BETA-1,3 GLUCANASE 28 260 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04974 Trre-Chr13 55877721 55879701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04974 141 249 Glycoside Hydrolase AT2G05790 53.153 1.48e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04974 - - psat:127132491 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04974 13 55877721 55879701 Trre13g04974 13 55877721 55879701 ECH
Trre13g04974 13 55877721 55879701 Trre1g04294 1 48587460 48589637 PCT