Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04275 ATGAACACAATAACCCTAATTCGTAACCGCGCCATAAATTCCGCGCGTAGAATCCTCGTTGATTCTAAGAATTCATCCATTTTTGGGTCCCCACTATCTCATCACGCTCTTCCTGTACCTAACCATTTTCTTCAACCACGTTTCAATCTTTACCACAGCAAAAATCACCACCCTTTTCGAAAACTAGGGTTTCAACAAGAATTGGGTAGTGCACACAAAATTTTCAACTCACCCTCTTCAAATTATGCAACTTCAAGTTGTTTTAGTTTAAATTCAGCAAAAAGGGGTGCAAGAGTTGGATTCAAGATTCATAATTTCTCAACTTCTGTTGAGACACGTGTTAATGACAATAATTTTGAGAAAATTTACATTCAAAGTGGGTTGAATGTGAAGCAATTAGTGGTGGAAAGTGTTCATAAAGATGAAGAGAGTGTTGTAAGAGAAGAAGAGAGTGTTGCGGAAAAACAAGCTTGGAAGTTGTTGAAGGATGCTATTGTTACTTATTGTGGAAATCCTGTGGGGACAGTGGCTGCAAATGATCCTGGTGATAAGCTACCATTGAATTATGATCAAGTGTTTATTCGGGATTTTATTCCTTCAGCTCTCGCTTTTTTGCTTAAAGGTGATAGTGAGATTGTCAAGTACTTTCTTCTGCATACCTTGCAATTGCAGAGTTGGGAGAAAACTGTGGACTGCTACAGTCCAGGACAGGGCTTGATGCCTGCTAGTTTCAAGGTTAGAACCGTAGCTCTTGAAGGAGATACCCGTGAAGAAGTTTTAGATCCTGATTTTGGGGAATCAGCTATTGGTCGAGTTGCACCTGTAGATTCAGGATTGTGGTGGATCATCCTGTTACGGGCTTATGGGAAGATCACGGGTGACTACAGCTTGCAAGAAAGGGTTGATGTTCAAACAGGCTTGAAAATGATTCTCAAATTGTGTCTAACAGATGGTTTTGATATGTTTCCATCTTTGCTAGTCACTGATGGGTCGTGCATGATAGACAGGCGTATGGGTATTCATGGTCACCCTCTTGAAATCCAAGCATTATTTTACTCGGCTCTACGCTGCTCGCGGGAAATGCTTGCTGTAACTGATGGAACCAATGATCTTGTTAGAGCCATTAACAACAGATTGAGTGCATTATCGTTCCACATTAGGCAATATTATTGGGTGGATATGAAAAAGATTAATGAAATATACAGGTACAAAACTGAAGAGTACTCCATGGATGCCATCAACAAATTCAACATCTATCCAGAGCAAATTCCTTTCTGGGTAATGGACTGGATTCCAGAAAAAGGCGGATATCTAATTGGGAATCTACAACCAGCTCACATGGATTTCCGGTTTTTCACGCTGGGAAATCTTTGGTCTATTATTTCATCACTGAGCACCCCAAGACAGAATGAGGCTATTTTAAATCTGATAGAAGCAAAATGGGATGATCTCGTAGGGCATATGCCTCTTAAGATATGTTATCCTGCCTTGGATAATGAAGAGTGGCGGATAATTACTGGCAGCGACCCAAAGAATACCCCGTGGTCATATCACAACGGTGGATCCTGGCCAACCCTTTTGTGGCAGTTCACACTGGCATGCATCAAAATGGGGAGAATTGATCTAGCCCAGAAAGCAGTTGATTTGGCCGAGAAAAGGCTGCCAGTTGATTCTTGGCCTGAATATTACGATACTCGTTCTGGAAAATTTATTGGTAAACAAGCCCGGCTATATCAAACATGGACCATAGCTGGGTTCCTTACATCCAAGATGCTTTTGAAGAATCCAAAAATGGCATCCACGTTATTCAGTGAGGAGGATTATGATCTCCTTGAGATATGCGTTTGTGGACTTAGCAAGAGTGGAAGGAAAAAATGCTCACGTATCGCTGCCAAGTCTCAGATTCTTGTATGA 1914 0.4127 MNTITLIRNRAINSARRILVDSKNSSIFGSPLSHHALPVPNHFLQPRFNLYHSKNHHPFRKLGFQQELGSAHKIFNSPSSNYATSSCFSLNSAKRGARVGFKIHNFSTSVETRVNDNNFEKIYIQSGLNVKQLVVESVHKDEESVVREEESVAEKQAWKLLKDAIVTYCGNPVGTVAANDPGDKLPLNYDQVFIRDFIPSALAFLLKGDSEIVKYFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVALEGDTREEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYSLQERVDVQTGLKMILKLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCSREMLAVTDGTNDLVRAINNRLSALSFHIRQYYWVDMKKINEIYRYKTEEYSMDAINKFNIYPEQIPFWVMDWIPEKGGYLIGNLQPAHMDFRFFTLGNLWSIISSLSTPRQNEAILNLIEAKWDDLVGHMPLKICYPALDNEEWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGRIDLAQKAVDLAEKRLPVDSWPEYYDTRSGKFIGKQARLYQTWTIAGFLTSKMLLKNPKMASTLFSEEDYDLLEICVCGLSKSGRKKCSRIAAKSQILV 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04275 637 Gene3D - 188 587 IPR012341 GO:0005975
Trre1g04275 637 PANTHER - 106 620 IPR024746 GO:0033926
Trre1g04275 637 Pfam Alkaline and neutral invertase 157 596 IPR024746 GO:0033926
Trre1g04275 637 FunFam probable alkaline/neutral invertase B 183 589 - -
Trre1g04275 637 SUPERFAMILY Six-hairpin glycosidases 165 588 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04275 Trre-Chr1 48396828 48401315 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04275 - - gmx:100797025 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04275 1 48396828 48401315 Trre1g04275 1 48396828 48401315 ECH
Trre13g04990 13 56022818 56025398 Trre1g04275 1 48396828 48401315 ECH
Trre13g04990 13 56022818 56025398 Trre1g04275 1 48396828 48401315 PCT