Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04184 ATGACTTCTTTGAGTAGAGAATTGGTGTTTCTCATACTTCAGTTTCTCGATGAGGAGAAGTTCAAGGAATCTGTGCACAAGCTCGAGAAAGAATCAGGTTTCTTTTTCAACATGAAGTACTTTGAAGAAAAAGTGCAGGCTGGCGAATGGGAAGAAGTTGAAAAGTATTTATCAGGGTTTACCAAAGTTGACGATAATAGATACTCAATGAAAATATTCTTTGAAATTAGGAAGCAGAAATATCTGGAAGCGCTTGATCGGCAAGACAAGCCAAAGGCTGTAGAGATATTAGTGGGTGATTTAAAAGTGTTCTCCACCTTCAATGAAGAACTATACAAAGAAATCACCCAGCTGTTAATTCTTAATAATTTCAGGGAGAACGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGTATTATGTTGATAGAACTAAAAAAACTCATAGAAGCAAATCCTCTTTTCCGTGATAAGCTTGCCTTCCCAACCCTTAAGTCATCGAGACTGAGAACTTTAATCAATCAGAGTCTGAACTGGCAGCACCAGCTTTGTAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTTACAGATCATACTTGTTCACCTTCTAATGGTCCACTGGCACCTACCCCTGCCAATCTTCCAATTTCTGCAGTTGCAAAGCCTGTTGCTTATACTTCACTCGGAGTTCATGGTCCTTTCCCTCCTGCTGTTGCAACTGCAAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCATCAGCTTCATCATCTGTTCAAGCAGCCGTTGTCACAACGTCAACCATACCAGTCCCTCAGAATCAAGTATCTATCTTGAAACGCCCTAGAACACCTCCGGCAACTCCTGGGATTGTTGACTATCAGAATGCTGATCACGATCAGTTAATGAAAAGGCTTCGTCCAGGTCATTCTGTGGAGGAGGTTTCCTATCCTGTGGCTCGACAAGCCTCTTGGTCACTGGATGATCTCCCGAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCTGTGATAAGCATGGATTTTCATCCTTCTCACCACACCTTACTGCTTGTTGGTTCTAATAATGGTGAAATTGCCCTCTGGGAACTCAGTTTACGAGAAAGGTTGGTCTCAAAGCCGTTCAAGATATGGGATGTGTCGGCTTGCTCATTACCATTTCAGGCTGCTGCAGTCAAGGATGTACCTATTTCTGTCAGTCGTGTCGCATGGAGCCCTGATGGAAATTTTGTGGGTGTTGCGTTTACTAAACATCTGATTCATTTATATGCCTACACCGGATCAAATGAGCTAGCCCAGCGAATAGAGGTTGATGCCCATGTTGGTGGTGTGAATGATTTGTCGTTTGCTCTACCAAATAAACAGTTGTGCATTGTAACTTGTGGAGATGATAAATTGATAAAGGTGTGGGATGCAAATGGTCGACGACTATTTACCTTTGAGGGGCATGAAGCACCTGTATATTCAATCTGTCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACAGCCATTGATGGGAAAATAAAGGCCTGGTTATATGATAACATGGGTTCTAGGGTTGACTATGATGCTCCTGGTCATTGGTGTACCACAATGCTTTACAGTGCTGACGGAAGTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAACGAAAGTGAAGGAGCCATTAAGAGAACGTACAATGGATTCCGAAAGAAGTCTGCTGGAGTCGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGTTGCAGGTGAAGACGGCCAAGTGAAGTTTTGGGACATGGACAATATTAATCTTATAACAAGCACTGATGCAGATGGTGGGTTACAGGGCCTTCCACGCTTGAAATTCAATAAGGAAGGAAATATTCTTGCTGTTACTACTGTGGACAATGGATTCAAGATACTGGCTAATGCTACTGGTCTTAGATCCTTAAGAACAATTGAAACTCCAGCATTTGAAGCATTGAGGTCACCCATTGAATCTGCTGCAATCAAGGTATCAGGCTCTACTACTGCTAATGTCAGTCCTGTAAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCACCTCCGATTCTTAATGGAGTTGATCCCATGAGTCGAAGTGTAGAGAAATCAAGAACTGTGGAAGATGCAACAGATAGAACTAAACCATGGCAATTGTCTGAAATTTTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCCGACAACACAGACTCTTTCAGCAAGGTTGTACGACTTTTATATACAAATTCTGCTGTTGGTATTCTGGCCCTTGGTTCAAATGGTGTCCAGAAGCTTTGGAAATGGTCTCGCAACGAACAGAATCCAACTGGGAAGGCAACTGCCAGTGTTGTTCCACAACGTTGGCAACCAAACAGTGGTCTTCTGATGACTAATGATATTGCGGGCGTCAACCTTGAGGAAGCAGTTCCTTGCATTGCCCTCTCAAAAAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAAGTTTCATTATTTAACATGATGACATTCAAGGTGATGACAACATTCATGCCACCACCTCCTGCGTCTACCTTTCTAGCTTTCCATCCCCAGGATAACAACATTATATCCATTGGGATGGAAGATTCAACCATTCACATCTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCATCAGAGACGAATTACCGGTTTAGCCTTTTCAACCAATCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTGTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCCATTCCAATTCAACTACCTGCGGGAAAGTCACCTGTTGGTGATACACGTGTTCAGTTCCATTCTGATCAACTTCGCTTATTGGTAGTTCATGAGACTCAATTGGCAATATATGAAGCCTCCAAGATGGAGCGCATTCGGCAGTGGATTCCCCAAGATGTTCTGCCAGCTCCCATATCATATGCGGCATACTCCTGCAACAGTCAGTTAATATATGCTTCATTTTGTGATGCAAACATTGGGGTTTTTGATGCTGATAGCTTGAGACTAAGATGTCGTATTGCACCATCAATATGCTGGTCATCAGCCGCTTTAAATAGAAGCCAAGCTGTGTATCCTCTCGTGATTGCTGCTCATCCACTTGAACCTAACCAGTTTGCTGTTGGGTTGAGTGATGGGTCCGTCAAAGTGATAGAACCAAGTGAATCAGAGGGTAAGTGGGGATCTTCTCCGCCAATGGACAGCGGAATCTTGAATGGTAAGGCACCATCCTCATCTACAACTAGCAACCATACGGCGGATCAGGCCCAACGATAA 3390 0.4304 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLILNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPSNGPLAPTPANLPISAVAKPVAYTSLGVHGPFPPAVATANANALAGWMANASASSSVQAAVVTTSTIPVPQNQVSILKRPRTPPATPGIVDYQNADHDQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVISMDFHPSHHTLLLVGSNNGEIALWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDVPISVSRVAWSPDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKVWDANGRRLFTFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLVAGEDGQVKFWDMDNINLITSTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKILANATGLRSLRTIETPAFEALRSPIESAAIKVSGSTTANVSPVNCKVERSSPVRPPPILNGVDPMSRSVEKSRTVEDATDRTKPWQLSEILDPVQCRSVTMPDNTDSFSKVVRLLYTNSAVGILALGSNGVQKLWKWSRNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSIPIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYEASKMERIRQWIPQDVLPAPISYAAYSCNSQLIYASFCDANIGVFDADSLRLRCRIAPSICWSSAALNRSQAVYPLVIAAHPLEPNQFAVGLSDGSVKVIEPSESEGKWGSSPPMDSGILNGKAPSSSTTSNHTADQAQR 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04184 1129 SMART ctlh 34 92 IPR006595 -
Trre1g04184 1129 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 907 1097 IPR011044 -
Trre1g04184 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Trre1g04184 1129 SMART Lish 4 36 IPR006594 GO:0005515
Trre1g04184 1129 Gene3D - 828 1100 IPR015943 GO:0005515
Trre1g04184 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Trre1g04184 1129 FunFam Topless-related protein 3 730 964 - -
Trre1g04184 1129 MobiDBLite consensus disorder prediction 1091 1129 - -
Trre1g04184 1129 SMART WD40_4 822 858 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 861 901 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 484 525 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 335 374 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 528 571 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 904 943 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 439 482 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 393 435 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 1056 1090 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 999 1035 IPR001680 GO:0005515
Trre1g04184 1129 SMART WD40_4 574 614 IPR001680 GO:0005515
Trre1g04184 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Trre1g04184 1129 Gene3D - 564 694 IPR015943 GO:0005515
Trre1g04184 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Trre1g04184 1129 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Trre1g04184 1129 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Trre1g04184 1129 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 397 948 IPR011047 -
Trre1g04184 1129 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 330 437 IPR011044 -
Trre1g04184 1129 MobiDBLite consensus disorder prediction 702 737 - -
Trre1g04184 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Trre1g04184 1129 MobiDBLite consensus disorder prediction 1110 1129 - -
Trre1g04184 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Trre1g04184 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1111 IPR027728 GO:0006355
Trre1g04184 1129 Gene3D - 328 563 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04184 Trre-Chr1 47200888 47210098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04184 429 642 Miscellaneous Gene Families AT5G08390 22.831 1.70e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04184 - - gmx:100793575 2093.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04184 1 47200888 47210098 Trre1g04184 1 47200888 47210098 ECH
Trre13g05023 13 56242852 56250196 Trre1g04184 1 47200888 47210098 PCT