Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05023 ATGAAATACTTTGAGGAAAAAGTACAGGCCGGCGAATGGGAAGAAGTTGAGAAGTATTTAGCTGGGTTTACCAAAGTTGATGATAATAGATATTCAATGAAAATATTCTTTGAAATCAGGAAACAGAAATATCTGGAAGCACTAGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTGAAAGTATTCTCCACCTTCAATGAGGAACTATACAAAGAAATAACTCAGCTATTAACTCTCACTAATTTCAGGGAGAACGAGCAGCTGTCCAAGTACGGTGACACCAAAACTGCTCGAGGGATTATGCTGTTAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTATTCCGTGATAAGCTCATCTTCCCTACTCTCAAGTCGTCAAGATTGCGGACATTAATCAATCAAAGTTTGAACTGGCAACACCAGCTTTGCAAAAACCCAAGGCCAAACCCAGATATAAAAACTTTATTTATTGATCACTCGTGTACACCTTCGAATGGTCCTCTAGCACCAACTCCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAACCTGCTGCTTATACTTCACTTGGAATGGGAGCTCATGGTCCCTTTCCACCTGCCGCAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGTTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCTATCATGAAGCGTCCAAGGACACCATCAACAACTCCTGGCATGGTTGAGTATCAGAGGGCTGATCATGACCAGCTAATGAAAAGGCTCCGGCCTGCTCCTTCTGTGGAGGAGGTTTCTTATCCTTCAGCTCGACAAGCCTCTTGGTCGCTGGATGATCTTCCAAGAACATTAGCTATGTCTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCACCAAACCTTACTCCTTGTTGGTTCTAACAATGGTGAAATTTCACTTTGGGAACTTGGGTTGCGAGAAAGGTTGGTCTCAAAACCATTCAAAATATGGGACATATCAGCTTGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATACACCTATTTCTGTCAGGCGTGTCACATGGAGTCATGACGGAAGTTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACATATATGCCTACAATGGATCAAATGAGCTTGCCCAGCGTATGGAGATTGATGCCCATATTGGTGCTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAACTCTGTATTGTGACTTGTGGTGATGATAAGTTGATAAAGGTGTGGGATTTAACGGGACGAAGACTATTTAACTTTGAAGGGCATGAGGCTCCAGTATATTCTATCTGTCCTCATCACAAGGAGAACATTCAGTTCATATTCTCAACTGCCATTGATGGTAAGATAAAAGCATGGTTATATGATAATATGGGTTCTAGGGTTGACTATGATGCCCCCGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAACTAGATTATTTTCTTGTGGGACGAGTAAAGATGGAGAGTCATTCCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAACGGGTTCAGAAAGAAATCTGCTGGTGTAGTGCAGTTTGACACAACCCAAAATCGCTTTCTGGCTGCTGGTGAAGATGGCCAAATAAAGTTTTGGGACATGGACAACATTAATCTTCTAACAAGCATTGATGCAGAGGGTGGACTACAGGGACTTCCACACTTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTTAGTACTGCAGATAATGGATTCAAAATTCTCGCTAATGCGGGTGGTCTTAGATCCCTAAAAACATCTGAAACTCCAGCATTTGAAGCATTGAGGTCCCCCATTGAATCTGCTGCAAACAAGGTATCTGGCTCTTCTGCTGTTACTGTTAGTCCTGTCAGCTGTAAAGTGGAAAGGAGCTCCCCTGCGAGGCCTTCTCAAATTCTTATTGGTGTTGATCCTACGGGTAGAAGTGTGGAGAAACCTAGGACAGTAGAAGATGTAATGGATAGAGCTAAATCATGGCAGCTGTCTGAAATTGTGGATCCTGTCCACTGTCGGTTAGTTACCATGCCTGACAGCACAGATACTTCCAGCAAGGTCGTTCGGCTTTTATATACGAATTCTGGGGCTGGTCTTTTGGCACTTGGCTCAAATGGTGTTCAGAAGCTGTGGAAGTGGTCTCGGAATGATCAGAATCCTAGTGGGAAGGCGACCGCCAGTGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATGTCTCGGGTGTCAACCTTGAAGAAGCGGTTCCTTGTATTGCACTCTCGAAGAATGATTCATATGTTATGTCTGCATGTGGTGGAAAGATTTCTTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCCTCTACATATCTGGCTTTCCACCCTCAGGATAACAACATCATTGCCATTGGGATGGAGGATTCAACTATTCACATTTATAATGTTAGAGTGGATGAGGTGAAAACAAAATTGAAGGGTCACCAAAAGCGAATTTCTGGTTTAGCTTTTTCAACCAATCTTGGCATCCTGGTTTCATCTGGTGCTGATGCTCACCTTTGCGTGTGGAGTATTGATTCATGGGAGAAAAGAAAAGCAGTTCCTATACAACTACCTGCGGGGAAGGCTCCTGTTGGTGAAACACGAGTGCAGTTCCATTCAGACCAACTCCGGTTATTGGTAGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGAACGCATTAGACAGTGGGTTCCACAAGATGTTCTGCCTGCTCCCATATCATATGCAGCTTATTCTTGCAATAGTCAGTTAATTTATGCTACATTTTGCGATGGCAACACTGGGGTTTTCGATGCTGACAGCTTGAGACTAAGATGTCGCATTGCACCATCGACATACTTCACACCAGCAACTTTAAATGGAAGCCAAGCTGTGTATCCTTTTGTTGTGGCAGCTCACCCACTAGAGCCCAACCAGTTTGCCCTTGGATTGACTGATGGGTCAGTGAAAGTGATAGAGCCCAATGAATCAGAGGGAAAGTGGGGAACTAGCCCACCTATGGATAATGGATTGATGAATGGTAGGACAGCATCATCTACAACAAGCAACCATACACCTGATCAGGGCACACAAAGATAA 3285 0.435 MKYFEEKVQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPAAYTSLGMGAHGPFPPAAATANANALAGWMANASVSSSVQAAVVTASTIPVPQNQVSIMKRPRTPSTTPGMVEYQRADHDQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTLAMSLHQGSSVTSMDFHPSHQTLLLVGSNNGEISLWELGLRERLVSKPFKIWDISACSLPFQAAMVKDTPISVRRVTWSHDGSFVGVAFTKHLIHIYAYNGSNELAQRMEIDAHIGAVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNINLLTSIDAEGGLQGLPHLRFNKEGNLLAVSTADNGFKILANAGGLRSLKTSETPAFEALRSPIESAANKVSGSSAVTVSPVSCKVERSSPARPSQILIGVDPTGRSVEKPRTVEDVMDRAKSWQLSEIVDPVHCRLVTMPDSTDTSSKVVRLLYTNSGAGLLALGSNGVQKLWKWSRNDQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMTTFMPPPPASTYLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKTKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDSWEKRKAVPIQLPAGKAPVGETRVQFHSDQLRLLVAHETQLAIYDASKMERIRQWVPQDVLPAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIAPSTYFTPATLNGSQAVYPFVVAAHPLEPNQFALGLTDGSVKVIEPNESEGKWGTSPPMDNGLMNGRTASSTTSNHTPDQGTQR 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05023 1094 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1078 IPR027728 GO:0006355
Trre13g05023 1094 SUPERFAMILY WD40 repeat-like 286 621 IPR036322 GO:0005515
Trre13g05023 1094 MobiDBLite consensus disorder prediction 1057 1094 - -
Trre13g05023 1094 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 876 911 - -
Trre13g05023 1094 MobiDBLite consensus disorder prediction 1071 1094 - -
Trre13g05023 1094 Gene3D - 373 640 IPR015943 GO:0005515
Trre13g05023 1094 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Trre13g05023 1094 ProSiteProfiles Trp-Asp (WD) repeats profile. 876 917 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 300 339 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 493 536 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 787 823 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 406 447 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 869 908 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 826 866 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 964 1000 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 1014 1055 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 361 400 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 539 579 IPR001680 GO:0005515
Trre13g05023 1094 SMART WD40_4 449 490 IPR001680 GO:0005515
Trre13g05023 1094 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 1 55 IPR006595 -
Trre13g05023 1094 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 588 IPR001680 GO:0005515
Trre13g05023 1094 SMART ctlh 1 55 IPR006595 -
Trre13g05023 1094 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 448 IPR001680 GO:0005515
Trre13g05023 1094 Gene3D - 288 351 IPR015943 GO:0005515
Trre13g05023 1094 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 348 IPR001680 GO:0005515
Trre13g05023 1094 Gene3D - 729 1063 IPR015943 GO:0005515
Trre13g05023 1094 FunFam Topless-related protein 3 695 929 - -
Trre13g05023 1094 Pfam WD domain, G-beta repeat 413 447 IPR001680 GO:0005515
Trre13g05023 1094 Pfam WD domain, G-beta repeat 874 908 IPR001680 GO:0005515
Trre13g05023 1094 Pfam WD domain, G-beta repeat 308 338 IPR001680 GO:0005515
Trre13g05023 1094 SUPERFAMILY WD40 repeat-like 795 1057 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05023 Trre-Chr13 56242852 56250196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05023 412 621 Miscellaneous Gene Families AT5G08390 25.701 1.11e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05023 - - gmx:100808421 1960.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05023 13 56242852 56250196 Trre13g05023 13 56242852 56250196 ECH
Trre13g05023 13 56242852 56250196 Trre1g04184 1 47200888 47210098 PCT