Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04121 ATGCTATTCCGATGCAATATTCTTGCTTTCGTTGGCGGTGGATCAGACCCTAGGTATCCTGTTAATAAGGTCATGATTTGGGATGATCATCAGTCACGGTGTATCGGCGAGTTGTCGTTTCGATCGGAGGTGAAAGGTGTTCGTCTTCGAAGGGATCGAATTGTGGTTGTTTTAGGGCATAAGATTTTTGTGTACAATTTTGCTGATCTTAAAGTTCTTCATCAAATTGAAACTATTGCGAACCCTAAGGGTCTTTGTGAGGTTTCACATGTTTCGGGAACTATGGTGTTGGCATGTCCAGGGTTGCAGAAGGGTCAGGTTAGGGTTGAACATTATGCTTCCAAGAGAACTAAGTTCATCATGGCGCATGATTCTAGAATTGCTTGTTTTGCTATAACCCAAGATGGACGTTTGCTCGCTACCGCCAGTTCCAAGGGGACTCTTGTTAGGATTTTCAATACCTTGGATGGTTCTTTGCTCCAAGAGGTACGGAGAGGTGCTGACCGAGCTGAGATATATAGCCTTGCCTTTTCTGCTACTGCTCAGTGGTTAGCTGTCTCGAGTGATAAGGGAACCGTTCATGTTTTCAATCTGAAGGTTGATTCAGGATTGTTGGGGCATGACAGATCACATACTACATCTGAGTCTAGTCCTACTAGCCCAACAGCGGCTTTGCCTCTTTCATTTATTAGAGGTGTGTTACCGAAGTATTTTAGCTCAGAGTGGTCCGTGGCTCAATTTCGCTTGCAAGAAGGTTTACAATATAATGTTGCCTTTGGTCATCAGAAAAATACAATTGTAATACTTGGCATGGATGGCAGCTTCTATCGATGTCAGTTTGATTCTGCAACCGGTGGGGAGATGACACAACTTGAATATTACAATTTTCTAAAGCCAGAAGAGACATTCTAG 912 0.4331 MLFRCNILAFVGGGSDPRYPVNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLGHKIFVYNFADLKVLHQIETIANPKGLCEVSHVSGTMVLACPGLQKGQVRVEHYASKRTKFIMAHDSRIACFAITQDGRLLATASSKGTLVRIFNTLDGSLLQEVRRGADRAEIYSLAFSATAQWLAVSSDKGTVHVFNLKVDSGLLGHDRSHTTSESSPTSPTAALPLSFIRGVLPKYFSSEWSVAQFRLQEGLQYNVAFGHQKNTIVILGMDGSFYRCQFDSATGGEMTQLEYYNFLKPEETF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04121 303 SMART WD40_4 113 153 IPR001680 GO:0005515
Trre1g04121 303 SMART WD40_4 31 66 IPR001680 GO:0005515
Trre1g04121 303 SMART WD40_4 156 197 IPR001680 GO:0005515
Trre1g04121 303 FunFam Autophagy-related protein 18a isoform A 1 282 - -
Trre1g04121 303 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 1 296 - -
Trre1g04121 303 Pfam WD domain, G-beta repeat 166 197 IPR001680 GO:0005515
Trre1g04121 303 SUPERFAMILY WD40 repeat-like 22 277 IPR036322 GO:0005515
Trre1g04121 303 Gene3D - 9 277 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04121 Trre-Chr1 46370576 46372946 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04121 K22991 - gmx:100787427 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04121 1 46370576 46372946 Trre1g04121 1 46370576 46372946 ECH
Trre13g04713 13 54126650 54128982 Trre1g04121 1 46370576 46372946 ECH