Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04713 ATGGCAACTCTTCCTGCTTCTCCTTCACCACCTTGGCCAAACCCTAACCCTAATCCCAATTCTATTTCTATTCCAAACCCTAATTTCCTCCCCGAACAATCTCAAACCCTCGACTTCGATTCCCTCATGTCTCCCCAATCTCACTCACCGCCACACCACTCCCCCACCGCCACTTCACCGGACTCTTCCCCCACCACACCGCCTCTTCCTCCTTCGCTACTTCAACTCTCCTTTAACCAAGACCACGCCTGCTTCGCCGCCGCAACTGACAACGGCTTCCGCATCTACAACTGCGATCCTTTCCGTGAACTCTTCCGCCGCGAATTCGGCGGCGGTGGAATCGGTCATGTGGAGATGCTTTTCCGATGTAACATATTAGCACTTGTTGGCGGTGGGTCCCACCCTCAGTACCCTCCCAATAAAGTCATGATCTGGGATGATCATCAAGGTACTTGCATCGGTGAGCTTTCGTTCCGTGCTTCAGTTCGCGGTGTTCGGCTTCGGCGTGATCGGATAATTGTGGTAGTGGAGCAGAAGATATTTGTGTATAATTTCGCTGACTTGAAGCTTTTGCATCAGATTGAAACTATTGCAAACCCTAAAGGGCTTTGTGCAGTTTCACACTTGTCTGATTCTCTTGTTCTTGCTTGTCCTGGTTTGCATAAGGGTCAAATTCGTGTTGAGCATTTTGCACAGAAGAAGACAAAGTTTATTTCTGCTCATGATTCAAGGATAGCTTCCTTTGCTCTCACACTTGATGGACAGTTAATCGCGACCGCCAGTGTCAAGGGCACGCTAATTCGGATTTATGATACGGATAATGGAACACTACTTCAGGAAGTGAGAAGGGGTGCAAATGCAGCAGAGATATTTAGTTTGGCGTTTTCTTCGACTGCTCAGTGGTTAGCAGTTTCAAGTGATAAGGGTACTGTCCATGTTTTTGGCCTTAAGGTTAATTCAAGTGTCCCTGAGAATGAAAAGTCACAAGGTTCGTCAAGTTCAGATGCTACCATTGCCCCATCTAGCTCATCTCGCTCTTTCATTAAATTTAAAGGAGTGTTGCCCAAGTATTTCAATTCAGAGTGGTCAGTTGCTCGGTTTCACTTACACGAGGGCACTCAGTACACAGTTGCATTTGGTCTCCAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTATAGATGCCAATTCGATCCAGCACATGGAGGTGAAATGACCCAGCTGGAATATCAAAACTTTTTAATGCCAGAGACAGCCTTGTGA 1272 0.4678 MATLPASPSPPWPNPNPNPNSISIPNPNFLPEQSQTLDFDSLMSPQSHSPPHHSPTATSPDSSPTTPPLPPSLLQLSFNQDHACFAAATDNGFRIYNCDPFRELFRREFGGGGIGHVEMLFRCNILALVGGGSHPQYPPNKVMIWDDHQGTCIGELSFRASVRGVRLRRDRIIVVVEQKIFVYNFADLKLLHQIETIANPKGLCAVSHLSDSLVLACPGLHKGQIRVEHFAQKKTKFISAHDSRIASFALTLDGQLIATASVKGTLIRIYDTDNGTLLQEVRRGANAAEIFSLAFSSTAQWLAVSSDKGTVHVFGLKVNSSVPENEKSQGSSSSDATIAPSSSSRSFIKFKGVLPKYFNSEWSVARFHLHEGTQYTVAFGLQKNTVIILGMDGSFYRCQFDPAHGGEMTQLEYQNFLMPETAL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04713 423 SMART WD40_4 274 315 IPR001680 GO:0005515
Trre13g04713 423 SMART WD40_4 52 97 IPR001680 GO:0005515
Trre13g04713 423 SMART WD40_4 231 271 IPR001680 GO:0005515
Trre13g04713 423 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 70 417 - -
Trre13g04713 423 Gene3D - 70 397 IPR015943 GO:0005515
Trre13g04713 423 MobiDBLite consensus disorder prediction 25 60 - -
Trre13g04713 423 Pfam WD domain, G-beta repeat 284 314 IPR001680 GO:0005515
Trre13g04713 423 MobiDBLite consensus disorder prediction 1 73 - -
Trre13g04713 423 SUPERFAMILY WD40 repeat-like 66 396 IPR036322 GO:0005515
Trre13g04713 423 MobiDBLite consensus disorder prediction 1 24 - -
Trre13g04713 423 FunFam Autophagy-related protein 18a isoform A 71 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04713 Trre-Chr13 54126650 54128982 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04713 K22991 - gmx:100781692 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04713 13 54126650 54128982 Trre13g04713 13 54126650 54128982 ECH
Trre13g04713 13 54126650 54128982 Trre1g04121 1 46370576 46372946 ECH