Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03486 ATGGCCTCATCGTGTGTAGGAATTTTATCATCACTCAACCCCTCTCTACTTTTCTCGCAAACCAAACATTCTATAAGTGTAACTTTGCCTTCAACAAGGAGAAGAGTTGTAAGAGCAGCTGTTACAGAGAAACTTGGCATCCAAATTGAGAGGAACCCTCCTGAGTCTAAGCTCACTCAACTTGGTGTTAGGCAGTGGCCCAAATGGGGATGCCCTCCAAGCAATTTTCCATGGACATATGAAGCCAAAGAGACATGCTATCTTTTGGAGGGAAAAGTGAAGGTGACTCCAAGTGGGGCTAATGAAGCAGTTGAAATTGCTGCTGGTGATTTGGTTGTGTTTCCTAAAGGGATGAGTTGCACTTGGGATGTTTCTGTTGGTGTGGATAAGCACTATAAATTTGAATAA 408 0.4314 MASSCVGILSSLNPSLLFSQTKHSISVTLPSTRRRVVRAAVTEKLGIQIERNPPESKLTQLGVRQWPKWGCPPSNFPWTYEAKETCYLLEGKVKVTPSGANEAVEIAAGDLVVFPKGMSCTWDVSVGVDKHYKFE 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03486 135 CDD cupin_TM1112-like 66 134 - -
Trre1g03486 135 SUPERFAMILY RmlC-like cupins 54 132 IPR011051 -
Trre1g03486 135 PANTHER OS04G0445200 PROTEIN 18 135 - -
Trre1g03486 135 Pfam EutQ-like cupin domain 59 132 IPR008579 -
Trre1g03486 135 Gene3D Jelly Rolls 36 134 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03486 Trre-Chr1 31329927 31330820 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03486 K06995 - gmx:100527470 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01578 11 15427474 15429837 Trre1g03486 1 31329927 31330820 PCT