Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03029 ATGGATCTCACTCAAGCAACACTAGAGATCTTTTCCAAACTTGAACACAAATGGCTTTCTCATTGCAAAGACACCACCAAAACTCGCATTCTAAGCATTGACGGCGGAGGAACCACCGCCATTGTAGCCGGCGCTGCATTAATCCATCTCGAGGATCAGATCCGTCTCCAGACCTCCGATCTCCATGCTCAGGTATCAGATTTCTTCGACATTGTCGCCGGTACCGGCATTGGCGCCATTCTTGCTGCAATGATGACAGCTGCAGATTCATTAGGTAGGCCTCTGTATACGGCAAGAGAAGCCATCCGTATCATCACTGAGAGAAACTCTGAACTGTACAAGCACAAATCCACCGGAGTTTTTCGCCGTCGCCGGAGATTCTCTTCGAAGAACATGGATAACGTGTTGAAGCAAGTGTTCCTTAGAAAAGAAGATCAAAAGATGTTGACCTTGAAGGACACGTGTAAACCGTTGCTTATACCTTGCTTTGACCTCAAGAGTTCGGCTCCATTTGTTTTTTCACGAGCCGATGCGTCAGAATCTCCGAGCTTCAACTTCGAACTCTGGAAAGTATGCCGCGCCACGTCAGCAACACCGAGCCATTTCAAGCCGTTTAACTTCACCTCCGTCGACGGAAAAACCTCCTGCTCCGCCGTAGACGGCGGTTTAGTCATGAACAATCCAACGGCTGCTGCAGTCACGCATGTTCTCCATAACAAGCGCGATTTTCCAACGGTAAACGGCGTGGAGGATCTTTTAGTACTTTCATTGGGAAACGGATCGTCGAACTCCAAGACATGCGAGAACCGCACGTGCTCAACGCCGTCGGTAGTTGACATTGTTCTCGACGGTGTTTCCGAGACTATTGACCAAATGCTTGGAAACGCTTTCTCTTGGAATCGTACGGATTACGTCAGAATTCAGGCGTTTGGTTTGGGAAGCGAAGGAGGAACGGAGGAGGAGGTGCTGAAAGAGAGAGGATTGGAATCGTTACCGTTTGGCGGGAAGCGGTTACTGACGGAGACTAACGGAAACAGAATTGATAGCTTTGTGCAACGTCTTGTTGCTAATGGAAAATCCAGTCCACCGTTCAGTCCTTGCAAGGATTCAGCGGTTGCTTCTCTTGCTAACGGACGCTAG 1140 0.4904 MDLTQATLEIFSKLEHKWLSHCKDTTKTRILSIDGGGTTAIVAGAALIHLEDQIRLQTSDLHAQVSDFFDIVAGTGIGAILAAMMTAADSLGRPLYTAREAIRIITERNSELYKHKSTGVFRRRRRFSSKNMDNVLKQVFLRKEDQKMLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKVCRATSATPSHFKPFNFTSVDGKTSCSAVDGGLVMNNPTAAAVTHVLHNKRDFPTVNGVEDLLVLSLGNGSSNSKTCENRTCSTPSVVDIVLDGVSETIDQMLGNAFSWNRTDYVRIQAFGLGSEGGTEEEVLKERGLESLPFGGKRLLTETNGNRIDSFVQRLVANGKSSPPFSPCKDSAVASLANGR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03029 379 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 233 IPR002641 GO:0006629
Trre1g03029 379 Pfam Patatin-like phospholipase 31 232 IPR002641 GO:0006629
Trre1g03029 379 MobiDBLite consensus disorder prediction 359 379 - -
Trre1g03029 379 PANTHER PATATIN-LIKE PROTEIN 6 2 369 - -
Trre1g03029 379 CDD Pat17_PNPLA8_PNPLA9_like 30 309 - -
Trre1g03029 379 Gene3D Cytosolic phospholipase A2 catalytic domain 16 361 - -
Trre1g03029 379 SUPERFAMILY FabD/lysophospholipase-like 27 309 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03029 Trre-Chr1 26034034 26035340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03029 1 379 Acyl Lipid Metabolism Gene Families AT3G63200 71.169 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03029 - - gmx:100777557 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03029 1 26034034 26035340 Trre1g03029 1 26034034 26035340 ECH
Trre13g03794 13 46094800 46096086 Trre1g03029 1 26034034 26035340 PCT