Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03794 ATGGAGCTTAGCAAAGTAACGTTAGAAATATTCACAAAACTCGAACAACAATGGCTCTCACTCTCACACTGCAAAGCCACTTCCAAAACTCGCATACTCAGCATTGACGGCGGAGGAACCACCGCCATTGTCTCCAGTGCTGCCTTAATCCACCTTGAGGACCAGATCCGTTTACAAACCAACAATCCTCATGCTCAAATCACCGATTACTTCGACATCATAACCGGAACCGGCATTGGCGCAATACTCGCCGCAATGATCACCGCCGATGACGGCTTCGGAAGACCTCTTTACACAGCCAGAGATGCTGTCAACTTCATTACAGAAAGGAATCACGAGTTTTACAAGCCGAAAACCGTCGGAGTTTTTCGCCGGCGTCGGAGATTCTCATCTACTAGCATTGAAAACGTGCTAAAGCGAGTTTTCCAAAGAAAAGAAAACGAAGGAAAATCGTTGACATTAAAGGACACGTGTAAGCCTCTGCTTATTCCTTGCTTCGATCTAAAAAGCTCTGCGCCGTTCGTTTTCTCACGAGCCGACGCTTCCGAGTCGCCGAGTTTCAACTTCGAGCTCTGGAAAGTCTGTCGTGCCACGTCATCAACTCCAAGCCTATTCAAACCGTTTCAATTCTCCTCCGTCGACAGAAAAACCTCTTGCTCAGCCGTGGACGGCGGACTTGTGATGAACAATCCAGCGGCTGCAGCCGTCACGCATGTTCTCCATAACAAACGAGATTTCCCGTCGGTGAATGGCGTTGAAGATTTGATGGTTCTGTCAATCGGAAACGGAGCTCCGGCGAACAGAGTGCGTGATGTTCGTGAATGTTCAACGTCGACGGTTGTTGACATTGCTCTCGACGGCGTATCGGAAACCGTTGATCAGATGTTGGGAAACGCGTTCAGTTGGAACCGTACTGACTACGCCAGAATTCAGGCGTTTGGTTTAGGAGAAAAAGGAAGTTGGGAAGAAACGGAGGTGTTAAATGAGAGAGTGTTGGAGTCGTTACCGTTTGGTGGGAAACGGTTACTACAAGAAACTAACGGTAACAGAATTGAGAGGTTTGTGCAACGTCTTGTTGCTACTGGAAAGTCTAGTTTACCACCCAGTCCTTGTAAGGTTACGCCGTTAGTTTCTTGCTAA 1140 0.4789 MELSKVTLEIFTKLEQQWLSLSHCKATSKTRILSIDGGGTTAIVSSAALIHLEDQIRLQTNNPHAQITDYFDIITGTGIGAILAAMITADDGFGRPLYTARDAVNFITERNHEFYKPKTVGVFRRRRRFSSTSIENVLKRVFQRKENEGKSLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKVCRATSSTPSLFKPFQFSSVDRKTSCSAVDGGLVMNNPAAAAVTHVLHNKRDFPSVNGVEDLMVLSIGNGAPANRVRDVRECSTSTVVDIALDGVSETVDQMLGNAFSWNRTDYARIQAFGLGEKGSWEETEVLNERVLESLPFGGKRLLQETNGNRIERFVQRLVATGKSSLPPSPCKVTPLVSC 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03794 379 Gene3D Cytosolic phospholipase A2 catalytic domain 20 366 - -
Trre13g03794 379 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 33 236 IPR002641 GO:0006629
Trre13g03794 379 SUPERFAMILY FabD/lysophospholipase-like 29 315 IPR016035 -
Trre13g03794 379 PANTHER PATATIN-LIKE PROTEIN 6 1 372 - -
Trre13g03794 379 CDD Pat17_PNPLA8_PNPLA9_like 32 335 - -
Trre13g03794 379 Pfam Patatin-like phospholipase 33 235 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03794 Trre-Chr13 46094800 46096086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03794 1 376 Acyl Lipid Metabolism Gene Families AT3G63200 68.571 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03794 - - gmx:100806989 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03794 13 46094800 46096086 Trre13g03794 13 46094800 46096086 ECH
Trre13g03794 13 46094800 46096086 Trre1g03029 1 26034034 26035340 PCT