Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02998 ATGAGAGATGAAAACTTGAAGAAAAGCAAGCTTTCATGGCCTAAAACTTTGGTTAAGAAATGGTTCAATATTAAGAGTAAAGCTGAAGATTTTCAAGCAGATGATGTTCTTTATGGAGGTGTTGATGAAGAGTGGAGGAACAACTGTTCAAAGAGGGAAGAAGAATGCACTAACAAGAAAAGCAAAACAGAAAGAACAAAGAGAAGATACTCGGAAAGAACGCGTCGATGTAAGATTGATCACGATGCAGCTCAGGTTACAGATGTGAATAATTATAGAATCTTTACTGCGACTTGGAATGTAGCCGGAAGATCTCCTCCAAGTTATTTGAATCTCGAAGATTGGCTTCATACTTCTCCTCCTGCCGATATTTATGTTCTTGGGTTTCAAGAGATTGTACCTCTCAATGCTGGAAATGTTTTGGGGACAGAAGACAACGGTCCTGCTAGAAAATGGCTAGCTCTTATACGAAAAACACTGAATAGTCTTCCCGGAACAAGTGGTGAATGCCACACTAATTCACCTCTACCAGATCCTGTTGTTGAGTTAGATTCTGATTTTGAGGGATCGATGAGGCAGAAGGCTACTTCTTTCTTCCATCGAAGGTCGTTCCAATCTTTGAGTCATAGTATGAGAATGGACAATGACATGTTAGTTCCACAAGCATGCCTCGATCGCCGTTTCAGTGTCTGCGATAGAATGATATTTGGTCATAGTGCAGGTGACTATGACCCTAATTATAGATGGGGGTCCTCGGATGACGAAAACGGTGAATCTCCTGTTATAGCGCAGTATTCACCAATGTCCTATAGAGGGTTTGCTTCTATGGAGGATAGAGATAGACAAACAGAGAACTCGAGATATTGTTTGGTTGCTAGTAAGCAAATGGTTGGGATTTTTCTAACTGTTTGGGTGAAAAGCAATATAAGAGACGATGTTCGCAACATGAAAGTGTCTTGTGTTGGTAGAGGGTTGATGGGATATCTTGGAAACAAGGGTTCAATATCAATTAGCATGTCTTTGCACAAAACAAGCTTTTGCTTCATATGCAGTCATTTGACTTCTGGACAAAAGGAGGGTGATGAGCTAAGGAGAAATTCAGATGTAATGGAGATTCTCAGAAAGACAAGGTTTCCCCGAGTTAATGGCATTGGTGATGAGTGCTCGCCTCAGACTATCCTGGATCATGATCGAATAATTTGGCTGGGAGATTTAAACTATCGGATAGCCCTTACTTACCGTGCGGCAAAAGCTCTTGTTGAGATGCATAATTGGAAGGTATTGTTAGAGAATGACCAGCTACATATAGAGCGAGAACAAGGTCGCGTCTTTGAAGGATGGAATGAGGGGCAAATATATTTCCCTCCCACATACAAGTATTCAAACAATTCGGACAGATATGCAGGCGATGAAAGGCAGTCAAAACAAAAGAGAAGAACTCCGGCATGGTGTGATCGGATCTTATGGTATGGAAGAGGCCTCCGCCAATTATCTTATGTTCGTGGGGAGTCAAGATTCTCTGATCATAGACCAGTTTGTAGTGTGTTCTTAGCAGAAGTCGAATCTGTTAGCCGTAACCGAATCAGAAAATGCTCAAGTTGCTCCAGTTCAAGGGTCGAAGTAGAAGAGTTGTTGCCTCATTCACAAGGCTACAATTATACCGATTTGACATACTATTGA 1680 0.4143 MRDENLKKSKLSWPKTLVKKWFNIKSKAEDFQADDVLYGGVDEEWRNNCSKREEECTNKKSKTERTKRRYSERTRRCKIDHDAAQVTDVNNYRIFTATWNVAGRSPPSYLNLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRKTLNSLPGTSGECHTNSPLPDPVVELDSDFEGSMRQKATSFFHRRSFQSLSHSMRMDNDMLVPQACLDRRFSVCDRMIFGHSAGDYDPNYRWGSSDDENGESPVIAQYSPMSYRGFASMEDRDRQTENSRYCLVASKQMVGIFLTVWVKSNIRDDVRNMKVSCVGRGLMGYLGNKGSISISMSLHKTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVNGIGDECSPQTILDHDRIIWLGDLNYRIALTYRAAKALVEMHNWKVLLENDQLHIEREQGRVFEGWNEGQIYFPPTYKYSNNSDRYAGDERQSKQKRRTPAWCDRILWYGRGLRQLSYVRGESRFSDHRPVCSVFLAEVESVSRNRIRKCSSCSSSRVEVEELLPHSQGYNYTDLTYY 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02998 559 FunFam type I inositol polyphosphate 5-phosphatase 4 isoform X1 72 184 - -
Trre1g02998 559 FunFam Type IV inositol polyphosphate 5-phosphatase 7 258 544 - -
Trre1g02998 559 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 18 536 IPR045849 GO:0004445
Trre1g02998 559 SUPERFAMILY DNase I-like 82 533 IPR036691 -
Trre1g02998 559 Pfam Endonuclease/Exonuclease/phosphatase family 97 509 IPR005135 GO:0003824
Trre1g02998 559 Gene3D Endonuclease/exonuclease/phosphatase 254 544 IPR036691 -
Trre1g02998 559 Gene3D Endonuclease/exonuclease/phosphatase 71 214 IPR036691 -
Trre1g02998 559 SMART i5p_5 213 524 IPR000300 GO:0016791|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02998 Trre-Chr1 25704219 25707151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02998 284 523 Acyl Lipid Metabolism Gene Families AT1G65580 30.389 9.03e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02998 - - gmx:100788764 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02998 1 25704219 25707151 Trre1g02998 1 25704219 25707151 ECH
Trre13g03832 13 46423037 46425971 Trre1g02998 1 25704219 25707151 PCT