Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03832 ATGAGAGATGAAAACTTGAAGAAAACCACTAAGTTTTCTTGGACAAAAACATTGGTCAAAAAGTGGTTCAATATCAAAACCAAATCTGAGGATTTTCAAGCAGATGATGACATTTCTCAAGTTGTTGATAAAGAGTATAGTAATAGAACCAACAACTACTCAGAGATGGAGGCATGTTCTATCAATAAAAGCAAAACAGATAGATCAAGGTACATAGATAGAATGCAAAGAGGTAAGAGTTACCTTGGTGAAGCTCAGGTTACAGATGTATGTAATTATAGAATCTTCGTTGCCACTTGGAATGTGGCTGGGAAGTCACCTCCGAGTTATTTAAGTCTTGAAGATTGGCTTCACATCTCTCCACCTGCTGATATCTACGTTCTCGGGTTTCAAGAAATTGTGCCTCTCAATGCCGGTAATGTTTTGGGAACGGAAGACAATGGTCCTGCAAGAAAATGGCTAGCCCTTATAAGGAAGACATTGAACAACCTTCCGGGAACAAGCGGTGGATACCACACGCCTTCTCCGGTTCCTGCTCCTGTTGTAGAGTTAGATGCTGATTTTGAGGGATCAATGAGGCAGAAGGCAACCTCTTTCTTCCATCGGAGGTCCTTTCAAGCCATGAGTCGTAGTATGAGAATGGATAATGACATGTCAATCCCACAAGCTTGCCTTGATCCCCGTCTCAGTGTCTGTGATAGAATGATAACTGGTCACAGGACAAGTGACTATGACACCAATTGTCGGTGGGGTTCCTCAGACGATGAAAATGAAGCTGGCGAATCCCCAATCACAACTGATTATTCGCCAATTTCATATAGTGGCTGTCTCCCTACTGAGGACAGTGAAAGACCAAGAGGAAATTCAAGATACTGTTTGGTTGCTAGTAAGCAAATGGTAGGTGTATTTCTAACAGTTTGGGTGAAAAGTGATATCAGAGATGATGTTCATAACATGAAAGTGTCTTGTGTTGGAAGAGGATTAATGGGATATCTTGGGAACAAGGGTTCTATATCAATTAGTATGTCATTGCGCCAAACAAGTTTTTGCTTCGTCTGTAGTCATTTGACTTCCGGACAAAAGGATGGTGACGAGCTAAGGAGAAATTCAGATGTAATGGAGATTCTTAGAAAGACAAGGTTTCCTCAGGTCCATGACACGAGTGATGTGAATTCTCCTCAGACAATTCTAGAACATGACCGAATAATTTGGATGGGAGATTTAAATTACCGGATAGCGTTGTCGTACCATGGAGCAAAAGCTCTTGTTGAGATGCATGATTGGAGGACTTTGTTAAAGAATGACCAGCTGTGTATAGAGAAGCGGCAAGGTCGTGTGTTTACAGGATGGTGTGAAGGGAAGATATATTTCCCTCCCACATATAAGTATTCAAACAATTCAGACAGTTATGCAGGTGATGACAGACGCTCGAAACAAAAGAGAAGAACTCCAGCGTGGTGTGATCGCATCTTGTGGTATGGAAGTGGCCTACAACAATTATCTTATGTTCGTGGGGAGTCGAGATTCTCCGACCATAGGCCAGTTTGTAGCATATTCTTGGCAGAAGTTGAGTCTATTAACAGTAACCAAATTAAGAAAGGCTCAAACTGCTCCAGTTCCAGGATTGAAGTAGAAGAGTTATTGCCACATTCACATGGTCACGGCTACACAGATTTCCATTTCTATTGA 1689 0.4168 MRDENLKKTTKFSWTKTLVKKWFNIKTKSEDFQADDDISQVVDKEYSNRTNNYSEMEACSINKSKTDRSRYIDRMQRGKSYLGEAQVTDVCNYRIFVATWNVAGKSPPSYLSLEDWLHISPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRKTLNNLPGTSGGYHTPSPVPAPVVELDADFEGSMRQKATSFFHRRSFQAMSRSMRMDNDMSIPQACLDPRLSVCDRMITGHRTSDYDTNCRWGSSDDENEAGESPITTDYSPISYSGCLPTEDSERPRGNSRYCLVASKQMVGVFLTVWVKSDIRDDVHNMKVSCVGRGLMGYLGNKGSISISMSLRQTSFCFVCSHLTSGQKDGDELRRNSDVMEILRKTRFPQVHDTSDVNSPQTILEHDRIIWMGDLNYRIALSYHGAKALVEMHDWRTLLKNDQLCIEKRQGRVFTGWCEGKIYFPPTYKYSNNSDSYAGDDRRSKQKRRTPAWCDRILWYGSGLQQLSYVRGESRFSDHRPVCSIFLAEVESINSNQIKKGSNCSSSRIEVEELLPHSHGHGYTDFHFY 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03832 562 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 19 539 IPR045849 GO:0004445
Trre13g03832 562 FunFam type I inositol polyphosphate 5-phosphatase 4 isoform X1 73 185 - -
Trre13g03832 562 SMART i5p_5 227 527 IPR000300 GO:0016791|GO:0046856
Trre13g03832 562 Gene3D Endonuclease/exonuclease/phosphatase 72 178 IPR036691 -
Trre13g03832 562 Gene3D Endonuclease/exonuclease/phosphatase 257 546 IPR036691 -
Trre13g03832 562 Pfam Endonuclease/Exonuclease/phosphatase family 98 512 IPR005135 GO:0003824
Trre13g03832 562 SUPERFAMILY DNase I-like 289 536 IPR036691 -
Trre13g03832 562 SUPERFAMILY DNase I-like 82 174 IPR036691 -
Trre13g03832 562 FunFam Type IV inositol polyphosphate 5-phosphatase 7 261 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03832 Trre-Chr13 46423037 46425971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03832 294 492 Acyl Lipid Metabolism Gene Families AT2G43900 30.942 1.70e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03832 - - gmx:100803074 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03832 13 46423037 46425971 Trre13g03832 13 46423037 46425971 ECH
Trre13g03832 13 46423037 46425971 Trre1g02998 1 25704219 25707151 PCT