Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02953 ATGGATGCAAAAATGATTGCACACAACATGAGCCTAACACCAACTTTATCTCAGTGGAGAAGCCTAAGACTTAAACCAAAACACACTTTTGTAGTTGGAGTTCTTGCAAGTCCTTCAGATAACATTGCTGAAGAAACATTAAAAAAAACTAATGTATACAATGATAATTGGTTTGATAAATTAGCTATAAACCATTTATCAAAAAGTGTTCAAGCAGCAACAGGCATAAGTAACAATAAAAGTGGTTTTGATAGTCTTGTGGAAGCAGCTACTGTGGCTTCACAGAAATTTAATACTATTCAACAGCAAGAAGTTATTTTAGATGCACTTGATAGAGCTTTCCCAAAGCCAATACTTTCAGTGATAAGGAGAGTGATGCCACCATCTAAATTAGCAAGGGAATATTTTGCCGTTTTCACCACTTTGTTCTGTTCTTGGTTACTCGGTCCATCTGAGGTAAGAGAATCGGAAATCAATGGGAAAAGGGAAAGAAATGTTGTCCACATAAAAAAATGCAGAGTCTTAGAACAAACAAATTGTGTTGGGATATGTATTAATCTCTGCAAAATGCCATCTCAAACCTTCATAAAGGACTCTTTTGGTATGCCACTCAACATGGTTCCAAATTTTGATGACATGAGTTGTGAGATGATATTTGGCCAGGAACCCCCATCATCAACCGATGATCCAGCACTCAAACAACCCTGCTATAAACTATGCAAAGCAAAGAAAAACCATGCAACGAAATGTCTTACCTAA 759 0.3663 MDAKMIAHNMSLTPTLSQWRSLRLKPKHTFVVGVLASPSDNIAEETLKKTNVYNDNWFDKLAINHLSKSVQAATGISNNKSGFDSLVEAATVASQKFNTIQQQEVILDALDRAFPKPILSVIRRVMPPSKLAREYFAVFTTLFCSWLLGPSEVRESEINGKRERNVVHIKKCRVLEQTNCVGICINLCKMPSQTFIKDSFGMPLNMVPNFDDMSCEMIFGQEPPSSTDDPALKQPCYKLCKAKKNHATKCLT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02953 252 Pfam Beta-carotene isomerase D27-like, C-terminal 146 227 IPR025114 GO:0005506
Trre1g02953 252 PANTHER BETA-CAROTENE ISOMERASE D27 37 250 IPR038938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02953 Trre-Chr1 25171886 25175440 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02953 K17911 - qsu:112034272 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03899 13 47194796 47197422 Trre1g02953 1 25171886 25175440 PCT