Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03899 ATGGAAGCAAATGTTTTTAGGCAGCAGAATAAAATTTCAACACTGACTTCAACTCACTACAACCTCATCAAACATAAACCTCAATATCCACCTTATATAGTTTCTGTGCTAAAAAAGCCTTCAAATTATAACATTACAGAAGAAATAACAACAAATAGTACTACTAATGTATACAAAGATAATTGGTTTGATCTCATAGCAATAAACCACTTATCAAAAACCATTCAAGCTGCCACAGGACTAAGTAATAATAAGAGTGGCTATGAGAGCCTTGTTGAGGCAACTTTTATGGTAAAACAGAAATTTAATCCTATTCAACAGCAAGAGGTTGTCATTCAAATTCTTGAAAGACTCTTCCCAAAGTTATTATTTGCAATGATAAAGAATCTGCCCCTACCAGCTAAATTCACAAGGGAACTTTATGCAATTACCACCACTATGTTATTTACTTGGTTAGTTGGGCCCTCTGAGGTGAGAGAATCGGAGATCAATGGGAAAAGAGAAAAAAATGCAGTCTATGTCAAAAAATGCAGGTTTTTAGAGGAGACAAATTGTGTAGGGATGTGTATTAATATGTGCAAAATTCCATCTCAAACGTTTATAAAGAACACTCTAGGTATGCCAGTCAACATGGTACCAAGTAAGTATCATTCTAAGCTTTGTTTGGGCATCGACTAA 678 0.3466 MEANVFRQQNKISTLTSTHYNLIKHKPQYPPYIVSVLKKPSNYNITEEITTNSTTNVYKDNWFDLIAINHLSKTIQAATGLSNNKSGYESLVEATFMVKQKFNPIQQQEVVIQILERLFPKLLFAMIKNLPLPAKFTRELYAITTTMLFTWLVGPSEVRESEINGKREKNAVYVKKCRFLEETNCVGMCINMCKIPSQTFIKNTLGMPVNMVPSKYHSKLCLGID 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03899 225 PANTHER BETA-CAROTENE ISOMERASE D27 39 214 IPR038938 -
Trre13g03899 225 Pfam Beta-carotene isomerase D27-like, C-terminal 151 214 IPR025114 GO:0005506
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03899 Trre-Chr13 47194796 47197422 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03899 K17911 - aew:130770160 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03899 13 47194796 47197422 Trre1g02953 1 25171886 25175440 PCT