Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02763 ATGTCGAATCTCTGTACCACTCTTTCTTCTACAACTGCCACTGCTTCTTCATCTTTCATCTTCAACGTTCAACCTCACTCATTACCACAACCTCTCAAATTCTACAATGCAACAAGGAAGAAGCATCGTAGCAGAAATTTGTTGCTCAAAATGTGCTCCTCCTCTTCCTCCTCCGTTCCTCAAAACGACACCGTTGTTGGTTGTGGATCGCTGTCCGTTGATTTCTTGGCTACTGTTGCTGCTTACCCTAAACCAGATGACAAAATCAGAACCACTACCTTGAAGGTTCAAGGTGGTGGCAATGCAGGCAATGCTTTAACTTGCCTTGCTCGCTTAGGTCTAAACACAAGGATCATTTCTAAGATTGCAGATGACAGCCAAGGCAGGGGTATATTAGATGAGTTACGGGCTGATGGGGTAGATACATCCTTTCTTGTGGTATCTGAAGAGGGAACTTCACCATTTACATATATTATTGTCGACAACGAAACGAAGACTCGTACTTGTATTCATACCCCTGGATATCCTCCAATGATCCCCCAAGATCTTTCAGAGTCAAGTTTGTTATCTGCATTGGATGGAGCAAGCATTGTATATTTTGATGGGAGGTTGTATGAAACTGCTCTAGTTGTTGCCCATGAGGCAGCTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTGGATGATCTCCTGAAATTTGCTGATTATGTTGTATGCTCAGCAAAGTTTCCAAAGGCATGGACAGAGGCATCAACTGTTCCACAAGCACTTGTTTCTATCCTTTTAAGGTTACCCAACGTAAAATTTGTGACTGTAACCCTAGGAAAAGATGGTTGTCTAATGCTCGAGAGAAGTGTTAATGCAAGTCCTTCCATAGAAGAAGTGGATGTAGACAACTTATTGAAATCGCTTGAGTTACGAAAGGATAAGAGTGCATCCATTCCAACCTGCATATCATCGTCAGTGGCAAAATTAAAGGCAGAAGGAATAGGAACAGTTACCGGGAAACTATACATTGGTACAGCTGAGAGCATTCCACCATCAGAGCTGATTGATACCACTGGTGCTGGGGATGCATTTATTGGAGCTGTGATCTATGCTATTTGTTCGAAGTTCTCACCAGAGAAAATGCTTCCCTTTGCTGCTAATGTGGCAGGTGCCAAGTGCAGAGATCTAGGAGCTCGAAGTGGTCTTCCATACCGTGCAGACTCGCGCTTAGCATCATTTATTCAATAG 1254 0.4322 MSNLCTTLSSTTATASSSFIFNVQPHSLPQPLKFYNATRKKHRSRNLLLKMCSSSSSSVPQNDTVVGCGSLSVDFLATVAAYPKPDDKIRTTTLKVQGGGNAGNALTCLARLGLNTRIISKIADDSQGRGILDELRADGVDTSFLVVSEEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLSALDGASIVYFDGRLYETALVVAHEAARKNIPILIDAERPREGLDDLLKFADYVVCSAKFPKAWTEASTVPQALVSILLRLPNVKFVTVTLGKDGCLMLERSVNASPSIEEVDVDNLLKSLELRKDKSASIPTCISSSVAKLKAEGIGTVTGKLYIGTAESIPPSELIDTTGAGDAFIGAVIYAICSKFSPEKMLPFAANVAGAKCRDLGARSGLPYRADSRLASFIQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02763 417 SUPERFAMILY Ribokinase-like 64 409 IPR029056 -
Trre1g02763 417 CDD ribokinase_group_B 65 406 - -
Trre1g02763 417 Gene3D - 63 402 IPR029056 -
Trre1g02763 417 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 358 371 IPR002173 GO:0016301
Trre1g02763 417 Pfam pfkB family carbohydrate kinase 347 405 IPR011611 -
Trre1g02763 417 Pfam pfkB family carbohydrate kinase 65 291 IPR011611 -
Trre1g02763 417 PRINTS Ribokinase signature 67 88 IPR002139 GO:0016301
Trre1g02763 417 PRINTS Ribokinase signature 94 113 IPR002139 GO:0016301
Trre1g02763 417 PRINTS Ribokinase signature 276 287 IPR002139 GO:0016301
Trre1g02763 417 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 50 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02763 Trre-Chr1 22855143 22860965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02763 - - gmx:100802550 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04092 13 48785096 48788286 Trre1g02763 1 22855143 22860965 PCT