Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04092 ATGTCTGGTGATTTCCTTCCTGAAAACTCAATTGTGGTGGGGTGTGGAGCTGTGGGATTGGATTTCTTGGCAACTGTTGCTGCTTTTCCTCAGCCAGATCAAAAAATCAGAAGCACTTCCTTCAAGATTCAAGGAGGTGGTAACACAGGCAATGCCTTAACCTGCGCGGCTCGCTTGGGCCTCAAGCCAAGGATTATCTCCAAGATAGCAGACGACACTCAAGGAAGAAGCATATTAGATGAACTACAGGCTGATGGTGTAGATACCTCATTTATAGTGGTATCTAAGGAAGGCACTTCACCATTTACCTATATTATTGTCGACAACCAAACCAAGTCGCGTACTTGTATACATACTCCGGGATTTCCTCCAATGAAACCAGCTGATCTTACCGAATCAAGTTTGTTATCTGCATTGAATGGAACGAAAATTGCTTATTTAGATGGGAGATTGCATGAAACTGCTCTAGTTGTTGCACACGAGGCAGTTAAGAAGAATATACCTATCTTAATGGATGCAGAAAGGCTAAGAGAAGGGTTGGATGATCTCATCAAACTAGTTGATTACGTTGTATGTGCTGCACAGTTTCCGCAGGTATGGACAGAGGCAGCAACTATTCCAAAAGCACTTGTTTCTATGCTTCTAAGGTTGCCAAAAGTCAAATTTGTAATTGTAACTTTGGGAAAAGATGGTTGTATAATGCTTGAGAGAAGTGCTAATGAGATTCCATCCACAGAAGAAGAAATGGATGTTGACAAATTACTGGAATCTCTGGAAACAAAAAAGAACGCAAGCGTTAACATTCCAACCTGCATATCATCACCGGTTACAAATTTGCGAGCAGAAGGTATAGGAACAATTTGTGGTAAGTTATATATTGGAACAGCTGAAAACATACCACCATCAGAGCTTATTGATACCACTGGTGCTGGTGATGCATTCGCCGGAGCTGTTCTCTACGCTATCTGTGCCAACTTCGCAACAGAGAAAATGCTATGCTTTGCTGCTAATGTGGCAGCTGCTAAGTGCAGAGCTCTAGGGGCGCGAAGTGGTCTTCCTCGTTACAACGATCAGCGCTTCGTATCCTTCATGTAG 1095 0.4283 MSGDFLPENSIVVGCGAVGLDFLATVAAFPQPDQKIRSTSFKIQGGGNTGNALTCAARLGLKPRIISKIADDTQGRSILDELQADGVDTSFIVVSKEGTSPFTYIIVDNQTKSRTCIHTPGFPPMKPADLTESSLLSALNGTKIAYLDGRLHETALVVAHEAVKKNIPILMDAERLREGLDDLIKLVDYVVCAAQFPQVWTEAATIPKALVSMLLRLPKVKFVIVTLGKDGCIMLERSANEIPSTEEEMDVDKLLESLETKKNASVNIPTCISSPVTNLRAEGIGTICGKLYIGTAENIPPSELIDTTGAGDAFAGAVLYAICANFATEKMLCFAANVAAAKCRALGARSGLPRYNDQRFVSFM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04092 364 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 306 319 IPR002173 GO:0016301
Trre13g04092 364 CDD ribokinase_group_B 11 354 - -
Trre13g04092 364 SUPERFAMILY Ribokinase-like 12 356 IPR029056 -
Trre13g04092 364 Pfam pfkB family carbohydrate kinase 17 241 IPR011611 -
Trre13g04092 364 Pfam pfkB family carbohydrate kinase 297 353 IPR011611 -
Trre13g04092 364 PRINTS Ribokinase signature 223 234 IPR002139 GO:0016301
Trre13g04092 364 PRINTS Ribokinase signature 41 60 IPR002139 GO:0016301
Trre13g04092 364 PRINTS Ribokinase signature 14 35 IPR002139 GO:0016301
Trre13g04092 364 Gene3D - 11 350 IPR029056 -
Trre13g04092 364 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 6 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04092 Trre-Chr13 48785096 48788286 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04092 - - ccaj:109795876 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04092 13 48785096 48788286 Trre13g04092 13 48785096 48788286 ECH
Trre13g04092 13 48785096 48788286 Trre1g02763 1 22855143 22860965 PCT