Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02744 ATGGAGGAAGCACTGGAACTGGCACGTGCCAAGGACGCAAAGGAGCGAATGGCCGGTGTAGAGCGTCTCCACCAAATTCTAGAAGCTTCTAGAAAGAGTCTAAGTTCAACTGAAGTTACTTCTCTCGTCGATTGTTGCTTGGATCTCTTGAAGGATAGTAGTTTTAGGGTCGCACAAGGCGCTCTTCAAGCTTTGGCTTCCGCCGCCGTTCTCTCCGGCGATCATTTCAAGCTTCACTTCAACGCGCTTGTTCCTGCTGTCGTTGATCGGTTAGGCGATGCTAAACAGCCTGTTCGTGATGCTGCTAGAAGGCTCTTGCTCACTCTCATGGAGGTTTCATCTCCTACAATAATTGTTGAAAGAGCTGGGTCCTTTGCTTGGACATGCAAAAACTGGAGAGTCAGAGAGGAGTTTGCGCGAACTGTGACATCTGCAATTGGTCTATTTTCATCTACTGAACTGCCCCTTCAACGGGCTATTCTTCCTCCAACTTTGCAATTGCTGAGTGATCCAAATCCTGCCGTCAAGGAAGCAGCTATTTTGTGCATTGAGGAAATGTTTGCGCAAGCTGGGTCTCAATTTCGCGATGAACTTCAGCGCCACAATCTCCCTTCTTCTTTGGTGAAATATATTAATGCTAGGCTAGAGGGGATTCAACCAAAAGTTCAGTCTTCAAATGGTATTTCTAGTGGTTATAATATCCCTGGAGAAATTAATTCCAAGAAAAGTAGTCCAAAAGCTAAAACTTCATCAAAGGAGACATCTCGTTTTGGAGCAGAAGGTGATGTCATTGAGAAAGGCATAGAACCTATAAAGGTGTATTCGGAGAAGGAATTCATCAGGGAAATTGAGAAGATTTCATCTACCCTTGTACCAGAAAAGGACTGGTCAGTGCGAATTGCTGCCCTGCAGAAAATCGAAGGTCTTGTTTTGGGAGGAGCTGCTGACTATCCATGTTTTTTTGGAATCCTAAAGCAGCTTGTCGGACCTTTAAGCACACAACTGTCAGATCGGCGGTCTACCATTGTGAAGCAGGCATGCCATCTGTTATGCTTTTTGTCAAAAGACCTCTTGGGTGATTTTGAAGCATGTGCTGAAGTGTTCATACCAGTCCTTTTGAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGTTACGCAACTGCAAAGTTGCTCGTGTGCTTCCTCGAATAGCTGATTGTGCAAAAAATGATCGCAGTGCAATACTTCGTGCAAGGTGCTGTGATTATGCTCTTTTGATACTAGAACATTGGCCTGATGCACCAGAAATACAGCGATCAGCAGATTTATACGAGGATATGATAAGGTGTTGTGTTTCGGACGCAATGAGCGAGGTGCGATCGACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGATCCCGTCGCCTATTTTCATCCTTTGACCCTTCTATTCAAAGGTTAATAAATGAAGAGGATGGAGGCAAACATAGGCGACATGCATCGCCTTCCGTTCGTGATAGAAGTGGACCGACGTCATCAACTCCTAATCTAATTGGTTATGGAACTTCAGCTATTATTGCAATGGACAGAAGTTCTAGTTTATCATCAGGGACATCTATGTCCTCCGGTGTTCTTCTTTCACAAGCTAAGCCACTTGGTAAAGGTACTGAACGTAGTTTAGAAAGTGTACTTCATGCAAGCAAACAGAAGGTCAGTGCTATTGAGAGCATGCTTAGAGGTTTGGATTTGTCAAATAAGCATAATTCATCTGCTCTGCGATCTTCAAGTTTGGATCTAGGAGTTGACCCTCCCTCATCTCGTGATCCCCCATTTCCTGCCGCTGTTTCAGCCTCAAATCATCTGACCACCTCTTCAACAACAGAATCATCTGGTTTGGGTGTCAATAGAGGTAGTAGCCGGAACGGTGGTTTGGGTTTGTCTGATATAATCACCCAAATTAAAGCTTCCAAAGATTCTAGCAAGTTATCACATAATAGCAATGTCGGTATTGAGCCTTCATCAGATTTTTTATCATACACAAGTAAACGGGCTACTGAAAAGTTACAAGGAAGAAGTTCTGCTGATGAAAATAGTTACATCCGGGAGACTAGGCGATATATGAATCCCAATGTGGATAGGCAATATACGGATGCCCTTTATAGAGATGGGAACTATAGGGATTCACAGAATAGTTATGTGCCCAATTTTCAGAGGCCACTGTTGAGAAAGAACGTAACTGCACGTGTGTCAGCTGGCAGGAGAAGGAGTCTTGATGATAGTCAATTATCTATTGGAGAGATGTCAAATTATTCAGAAGGACCAGCATCTCTTCACGAAGCTCTTAGTGAAGGACTTGGCTCAGGTTCTGACTGGTCTGCCAGGGTTTCTGCCTTTAATTACCTTCACACGTTATTGGAGCAAGGTCAAAAGGGTATTCAAGAAGTTGTCCAAAATTTTGAGAAGGTAATGAAGTTATTTTTTCAGCACTTGGATGACCCCCATCATAAAGTCGCACAGGCGGCTCTCTCCACACTTGCAGATATTATTCGTACATGCCGGAAGCCCTTTGAGGGTTACATGGAACGAATGTTGCCCCATGTTTTTTCTCGTTTAATTGACCCAAAAGAGCTTGTTAGGCAAGCATGCTCTACGACTTTGGAGGCTATTGGTAAAACATACAGTATAGATTCCCTCTTGCCCGCATTGCTACGTTCTCTCGATGAACAAAGGTCTCCAAAGGCTAAATTGGCTGTTATTGAGTTTGCAATCGGTTCCTTTAACAAGCATGCAATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCCAAGTTAGCCCCATTGGTTCACGATAAAAACACAAAACTTAAAGAAGCAGCTATTACATGCATTATATCAGTATACTCTCACTTTGATTCATCTGCAGTTTTGAATTTTATTCTTAGTTTGTCAGTTGATGACCAAAATTCTTTGAGACGAGCCCTTAAACAGCGCACCCCTCGCATTGAAGTAGACTTGATGAACTATCTGCAGAACAAGAAAGAGCGGCGTAATAAGTCTTCGTATGATCCATCTGATAATGTAGGAACATCCTCTGAAGAAGGATATGCTGGTTTGTCTAGGAAAACTCATTACATTGGTAGGTATTCTGGCGGTTCTGTAGATAGTGATGGTGGCAGGAAATGGAGTTCGCAAGATTCAAACCTGATTAAAGCCAGTCTTGGCCAACCAGCTTCTGATGAAACTGAGGAACATCTGTATCAGAATCTTCAGACTGATTGTGATAGCGGTATTGTTAGTTCAAAAGCCAAAGATCATTCTTACACAGTCGATTCAATGGATCAAAACTTTGGCTTTCAAACTGACCAACTTGGATATGTGGATAGTAGTAGCATGAACTTCGAAGGTCTATCAAATGATGTGGGTGCTAATGGTCTCATGTCATTAGAACATTTAAACATTGCCGAAGGCTTTGAACATCTCTCTGAATTGAACCATAACCATCATCACTCAGCTGAAGATGTGACGGTCAACCACCTGACAAACACAGGACTCAGCATTCCTCAAATTCTTCATATGATATGCAGTGGGGGTGATGGAAGCACTATTTCAAGCAAGCGGACTGCACTTCTACAGTTAGTTGAAGCTTCTGTAGCAAATGATCATTCTGTTTGGATCCAGTACTTCAATCAGATTTTGACTGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAATTAGAGAGCTTGCTCTTTCGTTGATACTTGAAATGCTTAAAAACCAGAAAGATGCCATGGAAAATTCAGTTGAGGTTGTAATTGAAAAGCTGCTTAATGTTACAAAGGATATTGTTCCCAAGGTTTCAAATGAAGCGGAGCACTGCCTTACAATTGTTTTATCTCAGAATGATCCATTCAGATGTTTAAGTGTTATTATCCCTTTACTGGTTACCGAGGACGAGAAAACTTTAGTCACTTGCATAAATTGCTTGACCAAGATTGTGGGGCGGCTCTCTCAGGAAGAACTGCTAGCTCAGTTACCCTCATTTCTGCCTGCATTGTTTGAAGCTTTTGGAAACCAGAGTGCGGATATCCGTAAGACTGTTGTTTTCTGTCTAGTGGATATTTATATCATACTTGGAAAAGCATTCTTACCATATTTGGAAGGGCTTAACAGCACACAGTTGAAGTTGGTTACCATTTACGCAAACCGAATCTCAAATGCAAGGACAGGAAAATCAGTTGATGCTGCTAACGATTAG 4299 0.4243 MEEALELARAKDAKERMAGVERLHQILEASRKSLSSTEVTSLVDCCLDLLKDSSFRVAQGALQALASAAVLSGDHFKLHFNALVPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWTCKNWRVREEFARTVTSAIGLFSSTELPLQRAILPPTLQLLSDPNPAVKEAAILCIEEMFAQAGSQFRDELQRHNLPSSLVKYINARLEGIQPKVQSSNGISSGYNIPGEINSKKSSPKAKTSSKETSRFGAEGDVIEKGIEPIKVYSEKEFIREIEKISSTLVPEKDWSVRIAALQKIEGLVLGGAADYPCFFGILKQLVGPLSTQLSDRRSTIVKQACHLLCFLSKDLLGDFEACAEVFIPVLLKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRSAILRARCCDYALLILEHWPDAPEIQRSADLYEDMIRCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPSIQRLINEEDGGKHRRHASPSVRDRSGPTSSTPNLIGYGTSAIIAMDRSSSLSSGTSMSSGVLLSQAKPLGKGTERSLESVLHASKQKVSAIESMLRGLDLSNKHNSSALRSSSLDLGVDPPSSRDPPFPAAVSASNHLTTSSTTESSGLGVNRGSSRNGGLGLSDIITQIKASKDSSKLSHNSNVGIEPSSDFLSYTSKRATEKLQGRSSADENSYIRETRRYMNPNVDRQYTDALYRDGNYRDSQNSYVPNFQRPLLRKNVTARVSAGRRRSLDDSQLSIGEMSNYSEGPASLHEALSEGLGSGSDWSARVSAFNYLHTLLEQGQKGIQEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIRTCRKPFEGYMERMLPHVFSRLIDPKELVRQACSTTLEAIGKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAIGSFNKHAMNPEGAANIGILKLWLAKLAPLVHDKNTKLKEAAITCIISVYSHFDSSAVLNFILSLSVDDQNSLRRALKQRTPRIEVDLMNYLQNKKERRNKSSYDPSDNVGTSSEEGYAGLSRKTHYIGRYSGGSVDSDGGRKWSSQDSNLIKASLGQPASDETEEHLYQNLQTDCDSGIVSSKAKDHSYTVDSMDQNFGFQTDQLGYVDSSSMNFEGLSNDVGANGLMSLEHLNIAEGFEHLSELNHNHHHSAEDVTVNHLTNTGLSIPQILHMICSGGDGSTISSKRTALLQLVEASVANDHSVWIQYFNQILTVVLEVLDDSDSSIRELALSLILEMLKNQKDAMENSVEVVIEKLLNVTKDIVPKVSNEAEHCLTIVLSQNDPFRCLSVIIPLLVTEDEKTLVTCINCLTKIVGRLSQEELLAQLPSFLPALFEAFGNQSADIRKTVVFCLVDIYIILGKAFLPYLEGLNSTQLKLVTIYANRISNARTGKSVDAAND 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02744 1432 Pfam HEAT repeat 160 186 IPR000357 GO:0005515
Trre1g02744 1432 Coils Coil 1268 1288 - -
Trre1g02744 1432 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Trre1g02744 1432 MobiDBLite consensus disorder prediction 226 245 - -
Trre1g02744 1432 FunFam Protein peg1 262 509 - -
Trre1g02744 1432 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Trre1g02744 1432 SUPERFAMILY ARM repeat 2 398 IPR016024 -
Trre1g02744 1432 Pfam CLASP N terminal 281 496 IPR024395 -
Trre1g02744 1432 Pfam CLASP N terminal 795 987 IPR024395 -
Trre1g02744 1432 Gene3D - 789 1011 IPR011989 -
Trre1g02744 1432 MobiDBLite consensus disorder prediction 595 609 - -
Trre1g02744 1432 MobiDBLite consensus disorder prediction 624 651 - -
Trre1g02744 1432 MobiDBLite consensus disorder prediction 496 525 - -
Trre1g02744 1432 PANTHER CLASP 32 1418 - -
Trre1g02744 1432 Gene3D - 264 505 IPR011989 -
Trre1g02744 1432 MobiDBLite consensus disorder prediction 595 651 - -
Trre1g02744 1432 SMART TOG_3 3 224 IPR034085 -
Trre1g02744 1432 SMART TOG_3 771 1017 IPR034085 -
Trre1g02744 1432 SMART TOG_3 1185 1424 IPR034085 -
Trre1g02744 1432 SMART TOG_3 278 510 IPR034085 -
Trre1g02744 1432 MobiDBLite consensus disorder prediction 226 256 - -
Trre1g02744 1432 MobiDBLite consensus disorder prediction 1025 1047 - -
Trre1g02744 1432 SUPERFAMILY ARM repeat 284 1421 IPR016024 -
Trre1g02744 1432 Gene3D - 1213 1424 IPR011989 -
Trre1g02744 1432 Gene3D - 1 222 IPR011989 -
Trre1g02744 1432 Coils Coil 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02744 Trre-Chr1 22677157 22692361 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02744 K16578 - gmx:100801377 2333.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02744 1 22677157 22692361 Trre1g02744 1 22677157 22692361 ECH
Trre13g04105 13 48939957 48952651 Trre1g02744 1 22677157 22692361 PCT