Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04105 ATGGAGGAAGCATTGGAACTTGCACGCGCTAAAGACACAAAGGAAAGGATGGCTGGTGTAGAGCGTCTCTACCAACTTCTAGAAGCTTCTAGAAAGAGTCTTACATCTTCTGAAGTTACTTCGCTCGTTGATTCTTGCATCGATCTCTTGAAGGATAACAATTTCCGTGTTTCTCAGGGCGCACTTCAGTCTCTTGCTTCCGCCGCTGTTCTCTCCGGCGAACACTTTAAGCTTCACTATAACGCTCTTCTTCCTGCCGTTGTGGACCGTCTCGGTGATGGTAAACAGCCTGTCCGTGACGCCGCACGACGGCTCCTTCTCACACTCATGGAGGTTTCTTCTCCTACAATAATTGTTGAAAGAGCAGGATCCTCAGCTTGGACGCACAAAAGCTGGAGAGTCAGAGAGGAGTTTATACGAACTGTAACATCTGCAATTAATCTATTTTCAGCTACTGAACTTCCACTTCAACGGGCTATCCTTCCTCCTGTTTTGCAGTTGCTGAATGACCCAAATCTTGCTGTTAGAGAAGCGGCTATTTTGTGTGTTGAGGAAATGTATACACAAGCTGGACCTCAATTTCGTGATGAACTTCACCGCTACAATCTTCCTTCATCCTTGGTGAAAGATATTAATGCCAGGCTAGAGGGTATTCAACCAAAAGTGCGCTCTTCAGATGGTATTTCAAGTGGTTATATTACTGGGGAAGTTAACCCTAAACCCAAGAGAAGTAGTCCAAAGGCCAAAAGTTCTTCTAGGGAGGCCTCTCTTTTTGGAGCAGAAGGTGATGTCACGGAGAAACCCATAGACCCTGTCAAAGTGTACTCAGATAAGGCGTTAATCAGGGAAATTGAGAAGATTGCATCTATCCTTGTGCCTGAAAAAGACTGGTCCGTTCGTATTGCTGCTATGCAGAGAATTGAGGGTCTTGTTCTAGGAGGCGCTGCTGATTATCCATGTTTTCGAGGACTCCTTAAGCAACTTGGTGGACCTTTAAGTACACAATTGTCAGACAGAAGATCTAGCATTGTAAAACAGGCTTGCCATTTATTGTGTTTTTTGTCAAAGGAACTTTTGGGTGATTTTGAAGCATATGCCGAAATGTTTATACCGGTCCTTTTCAAGCTGGTTGTGATTACTGTACTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGCTGCGCAACTGCAAAGTTGCTCGTGTGCTTCCCCGCATAGCCGACTGTGCTAAAAATGATTGCAATGCAGTACTTCGTGCAAGGTGCTGTGAATATGCTCTTTTGGTCATAGAACATTGGCCGGATGCACCAGAAATACATCGCTCAGCAGAGTTATATGAGGATATGATTAAGTGTTGTGTTTCAGATGCAATGAGTGAGGTACGATCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCTTATTTTCATCCTTTGACCCTGTTATTCAACGGTTAATAAATGAAGAGGATGGAGGAATACACAGGCGACATGCTTCACCTTCCATTCGAGATAGAGGTGCACTGATGTCATTACCCAGTCAAGCCTCTGCTTTGTCTAATCCACATGGTTATGGAACATCTGCAATTGTTGCAATGGATAGAAGTTCAAGTTTATCATCAGGGACATCTGTCTCCTCTGGTGTACTTCTTTCACAGACAAAGTCACTTGGTAAGGGTACAGAACGTAGTTTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCTCTGCTATTGAAAGCATGCTTAGGGGCTTGAATATGTCTGATAAGCACAATTCATCAACTCTCCGGTCATCAAGTTTGGATCTAGAAGTTGACCCTCCATCGTCTCGTGATCCGCCTTTCCCAGCTGCCGTCTCTGCATCCAATCATTTGACAAGCTCTTCGGCAACAGAACCTACTGCTTATGGTGTCTATAAAGGTAGCAACCGAAATGGTAGTCTGGGTTTGTCCGACATAATCACTCAAATTCAAGCTTCCAAAGATTCCGCCAAGTCATCATATCATAGTAATGTTGAAATTGAACCTTTACCATCATCTTCCTCATATTCAACTAGAAGGTCTTCTGAAAGATTACAAGAAAGAGGTTCTGTTGATGACAACAGTGACATTAGGGAGGCTAGGCGGTTTATGAACCACACCACTGATAAGCAGTATTTGGATGCCTCTTATAGAGATGGAAACTTTAGGGAATCACATAATAGTCACGTGCCTAATTTTCAGAGACCACTAGTGAGAAAGAATGTAGCTGGACGTATGTCTGCTGGCAGGAGGAAGAGTTTTGATGATAACCAGCTATCTCCTGGAGAGATGTCAAGTTATGCAGATGGACCAGCATCTCTTCATGAAGCTTTGAGTGAAGGACTTAGGTCAGGTTCTGACTGGTCTTCTAGGGTTGCTGCATTTAACTATCTTCACTCGTTGTTGCAACAAGGTCCAAAGGGAACTCTAGAAGTTGTTCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGATCCTCACCATAAAGTTGCACAGGCTGCTCTTTCAACACTAGCAGATATTGTTCCAGCATGTCGAAAGCCTTTTGAGGGTTACATGGAAAGAATATTACCACATGTCTTTTCTCGGTTAATTGATCCTAAAGAGGTTGTTAGGCAGCCATGTTCAACAACCTTGGACGTTGTTAGCAGAACTTACAGCGTTGATTCTCTCTTACCTGCACTGTTACGTTCTCTAGACGAACAAAGGTCTCCAAAGGCTAAATTGGCCGTGATTGAATTCTCAATCAATTCCTTTAACAAACATGCAATGAATGCAGAAGGTGCTGCTAATATTGGCATACTAAAATTGTGGCTCGCTAAGTTAACTCCTTTGGTTCATGATAAGAATACAAAGCTTAAAGAAGCAGCTATTACTTGCATTATATCAGTGTACACTCACTTTGATTCAACTGCAGTTCTTAATTTCATTCTGAGTTTGTCAGTGGAAGATCAAAATTCTTTGAGACGAGCCCTTAAACAGTACACCCCTCGCATTGAAGTAGACCTAATAAACTATCTGCAGAACAAGAAAGAGCGACAACGTTCCAAGTCTTCCTATGATCCATCTGATGTTGTAGGAACATCATCTGAAGACGGGATGGTTGGTTTCTCTAGGAAAGCTCATTACCTTGGAAGATATTCGGTTGGTTCCCTAGATAGTGATGGTGGTAGAAAGTGGAGCTCCCAGGATTCAACTATTTTGAAATCCAGTCTTGGTCCAGTAACTTCTGTTGAAAGTGAGGACCATAATCATAATCATAATAACAATAATAATAATCTTGAGACTGATTCTTATTGTGATAATCTTCATTCAAAATCCAAAGATCATGCATATTCAGTCAATCCAATGGGGGAAAATTTCAGCTCTCAATCTAATCAACTTGGACATGTGGACAGTAACATCGATTTCGAGGGTATTTCAACTCCTCGTCTAGATGTTAATGGTCCGGTGTCATTAGAGCATTTAAATGTTGGTGAAGGTTATGCACATGACAGAGAACTTCCTTCTGCATTGGAGCTTAATCATCACACAAGTGAAGCTGTAAAGATTAACTCCATGACAGACACTGGACCCAGTATTCCTCAAATTCTTCATATGATATGCAATGCTGATGATGGAAGCCCTGTTTCTAGTAAACAGACTGCACTTCAACAGTTATTTGAAGCTTCTATTACAAATGATCAGTCTGTTTGGACTAAGTACTTCAATCAGATTTTGACCACTGTGCTTGAGGTGCTGGATGATTTGGATTCCTCAGTCAGAGAGCTTGCTCTTTCATTGATAGTTGAAATGCTCAAAAACCAGAAAGATGCCCTGGACAATTCAGTTGAAATTGTAATTGAGAAGCTGCTTCATGTTACAAAAGATATCGTTCCTAAGGTTTCAAATGAAGCAGAGCACTGCCTGACCATTGTTTTATCTCAGCATGATCCATTCAGATGTTTAAGTGTTATTGTCCCTCTACTGGTTACCGAAGATGAGAAGACTCTTGTCACTTGCATTAATTGCTTAACAAAGCTGGTGGGCAGGCTCTCTCAGGAGGAACTGATGGCTCAGTTACCCTCGTTTCTGCCTGCTCTTTTCGAAGCTTTTGGAAACCAGAGCGCAGATGTTCGAAAGACTGTTGTTTTCTGTCTCGTGGATATTTATATAATGCTTGGGAAAGCATTCTTGCCATATTTGCAAGGCCTTAACAGCACACAGTTGAAGCTGGTCACCATTTATGCTAATCGAATCTCACAAGCCAGGACAGGCAAAGCAATTGACGCCGTTCATGATTAG 4350 0.4214 MEEALELARAKDTKERMAGVERLYQLLEASRKSLTSSEVTSLVDSCIDLLKDNNFRVSQGALQSLASAAVLSGEHFKLHYNALLPAVVDRLGDGKQPVRDAARRLLLTLMEVSSPTIIVERAGSSAWTHKSWRVREEFIRTVTSAINLFSATELPLQRAILPPVLQLLNDPNLAVREAAILCVEEMYTQAGPQFRDELHRYNLPSSLVKDINARLEGIQPKVRSSDGISSGYITGEVNPKPKRSSPKAKSSSREASLFGAEGDVTEKPIDPVKVYSDKALIREIEKIASILVPEKDWSVRIAAMQRIEGLVLGGAADYPCFRGLLKQLGGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEAYAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDCNAVLRARCCEYALLVIEHWPDAPEIHRSAELYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPVIQRLINEEDGGIHRRHASPSIRDRGALMSLPSQASALSNPHGYGTSAIVAMDRSSSLSSGTSVSSGVLLSQTKSLGKGTERSLESVLHASKQKVSAIESMLRGLNMSDKHNSSTLRSSSLDLEVDPPSSRDPPFPAAVSASNHLTSSSATEPTAYGVYKGSNRNGSLGLSDIITQIQASKDSAKSSYHSNVEIEPLPSSSSYSTRRSSERLQERGSVDDNSDIREARRFMNHTTDKQYLDASYRDGNFRESHNSHVPNFQRPLVRKNVAGRMSAGRRKSFDDNQLSPGEMSSYADGPASLHEALSEGLRSGSDWSSRVAAFNYLHSLLQQGPKGTLEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKEVVRQPCSTTLDVVSRTYSVDSLLPALLRSLDEQRSPKAKLAVIEFSINSFNKHAMNAEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHFDSTAVLNFILSLSVEDQNSLRRALKQYTPRIEVDLINYLQNKKERQRSKSSYDPSDVVGTSSEDGMVGFSRKAHYLGRYSVGSLDSDGGRKWSSQDSTILKSSLGPVTSVESEDHNHNHNNNNNNLETDSYCDNLHSKSKDHAYSVNPMGENFSSQSNQLGHVDSNIDFEGISTPRLDVNGPVSLEHLNVGEGYAHDRELPSALELNHHTSEAVKINSMTDTGPSIPQILHMICNADDGSPVSSKQTALQQLFEASITNDQSVWTKYFNQILTTVLEVLDDLDSSVRELALSLIVEMLKNQKDALDNSVEIVIEKLLHVTKDIVPKVSNEAEHCLTIVLSQHDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKAIDAVHD 1449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04105 1449 Gene3D - 796 1018 IPR011989 -
Trre13g04105 1449 MobiDBLite consensus disorder prediction 674 723 - -
Trre13g04105 1449 MobiDBLite consensus disorder prediction 674 698 - -
Trre13g04105 1449 SMART TOG_3 3 224 IPR034085 -
Trre13g04105 1449 SMART TOG_3 781 1023 IPR034085 -
Trre13g04105 1449 SMART TOG_3 267 511 IPR034085 -
Trre13g04105 1449 SMART TOG_3 1205 1441 IPR034085 -
Trre13g04105 1449 MobiDBLite consensus disorder prediction 631 647 - -
Trre13g04105 1449 MobiDBLite consensus disorder prediction 599 647 - -
Trre13g04105 1449 Gene3D - 1230 1441 IPR011989 -
Trre13g04105 1449 Gene3D - 1 221 IPR011989 -
Trre13g04105 1449 Coils Coil 1285 1305 - -
Trre13g04105 1449 MobiDBLite consensus disorder prediction 699 723 - -
Trre13g04105 1449 PANTHER CLASP 32 1435 - -
Trre13g04105 1449 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Trre13g04105 1449 FunFam Protein peg1 263 510 - -
Trre13g04105 1449 MobiDBLite consensus disorder prediction 599 616 - -
Trre13g04105 1449 Pfam CLASP N terminal 281 497 IPR024395 -
Trre13g04105 1449 Pfam CLASP N terminal 800 994 IPR024395 -
Trre13g04105 1449 Gene3D - 264 503 IPR011989 -
Trre13g04105 1449 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Trre13g04105 1449 Coils Coil 10 30 - -
Trre13g04105 1449 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Trre13g04105 1449 SUPERFAMILY ARM repeat 5 399 IPR016024 -
Trre13g04105 1449 MobiDBLite consensus disorder prediction 226 259 - -
Trre13g04105 1449 SUPERFAMILY ARM repeat 288 1439 IPR016024 -
Trre13g04105 1449 MobiDBLite consensus disorder prediction 1094 1120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04105 Trre-Chr13 48939957 48952651 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04105 K16578 - gmx:100796697 2423.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04105 13 48939957 48952651 Trre13g04105 13 48939957 48952651 ECH
Trre13g04105 13 48939957 48952651 Trre1g02744 1 22677157 22692361 PCT