Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02720 ATGGTGGGTATTTTCTCGTTGGTCACTGGAATGGCCGGACCTAGCGGATTTGGATCCTCTACAACTGCTGAACAAGTTACTGAAGGAATTGATGCTAGCAACCTCACAATAATTATCACGGGAGGAGCAAGTGGTATAGGCTTGGAGACGGCGCGAGTCTTGGCTCTTCGAAAGGCACATGTCATCATTGCCGCGAGAAACATGGAATCTGCAAAGGAAGCTAAGCAACTTATATTAGAGGACAATGAATCCGCTCGAGTGGACACAATGATGCTCGATCTTTGTTCAATAAAGTCTGTTAGATCATTTGTTGAAAACTTCCTTGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAATCATGTTCTGTCCCTTCCAACTATCACATGATGGAATTGAGATGCAGTTTCAAACAAATCATCTTGGTCATTTCTTGTTGACAAACCTTCTACTTGACAAAATGAAACAAACTGCAAAATCAACTGGAATTGAAGGAAGAATCATAAATCTTTCATCAATTGCTCACACTTACACTTATGAAGAAGGCATTCGATTGGATAACATCAATGATCAAATTGGTTACTCTGACAAGAAGGCTTATGGACAATCCAAGTTAGCCAACATATTACACTCAAATGAGCTTTCTCGTCGCTTGAAGGAAGAAGGTGTCAACATCACAGCCAACTCAGTGCACCCAGGAATAATAATGACTCCTCTAATGAGGCACTCTTCTTTACTTATGAACTTCTTGAAGATGTTCACATTTTTCATATGGAAGAATGTCCCACAGGGAGCTGCAACAACATGCTATGTTGCTCTGCATCCAAGCTTGAAAGGGGTAACTGGAAAGTACTTTTTGGACTGTAATGAGTTTCAACCAAGTGCATTTGCGTCAAATGGAATATTAGGAAGAAAACTTTGGGATTTTAGCAACAAGTTGATCAATTCAATTTCAAAAGCTTGA 972 0.3992 MVGIFSLVTGMAGPSGFGSSTTAEQVTEGIDASNLTIIITGGASGIGLETARVLALRKAHVIIAARNMESAKEAKQLILEDNESARVDTMMLDLCSIKSVRSFVENFLALDLPLNILINNAGIMFCPFQLSHDGIEMQFQTNHLGHFLLTNLLLDKMKQTAKSTGIEGRIINLSSIAHTYTYEEGIRLDNINDQIGYSDKKAYGQSKLANILHSNELSRRLKEEGVNITANSVHPGIIMTPLMRHSSLLMNFLKMFTFFIWKNVPQGAATTCYVALHPSLKGVTGKYFLDCNEFQPSAFASNGILGRKLWDFSNKLINSISKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02720 323 Gene3D - 23 320 - -
Trre1g02720 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Trre1g02720 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Trre1g02720 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Trre1g02720 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Trre1g02720 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Trre1g02720 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Trre1g02720 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Trre1g02720 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Trre1g02720 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Trre1g02720 323 PANTHER RETINOL DEHYDROGENASE 14 317 - -
Trre1g02720 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02720 Trre-Chr1 22462543 22466876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02720 24 296 Acyl Lipid Metabolism Gene Families AT1G63380 23.891 2.25e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02720 - K11153 gmx:100807056 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02720 1 22462543 22466876 Trre1g02720 1 22462543 22466876 ECH
Trre13g04134 13 49199179 49205771 Trre1g02720 1 22462543 22466876 PCT