Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04134 ATGGTGGGTGTTATATCGTTGATAACTGGGATTGCTGGTCCAAGTGGGTTTGGGTCAGCTTCAACTGCAAATCAAGTTACTGAAGGAATTGATGCTAGCAATCTTACCATAATTATCACAGGAGGAGCAAGTGGTATAGGTTTAGAGACAACAAGAGTGTTAGCTCTTAGAAAGGCACATGTCATAATTGGTGCAAGAAACATGGAATCTGCAGAGAAAGCTAAGCAACAAATAACACATGAGAACAAATCTGCAAGAGTTGACATAATGAAACTTGACCTATGCTCAACTAAATCTGTTAGATCATTTGTGGACAACTTCATTGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAATAATGTTCTGCCCCTTCAAGCTATCAGATGAGGGGATTGAGATGCAATTTGCAACAAACCATCTTGGCCATTTTCTCTTGACAAATCTTCTTCTTGACAAAATGAAACAAACTGCAAAAACAACTGGAATAGAGGGAAGGATCATAAATCTATCATCAATTGCTCATAGATACACTTACTGCAGAAAGGGGATTAGATTTGATAAGATCAATGATAAAAAAGGTTATTCTAAGAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACATGCAAATGAACTCTCTCGTCGCCTTCAGGAAGAAGGTGTGAACATTACAGCTAATTCTGTCCACCCAGGAGTGATCATGACTCCTCTTATGAGATACTCTTCTTACCTTATGCATTTCTTGAAGGTCTTCAGCTTTTACATTTGGAAGAACGTTCCACAGGGAGCAGCCACTACATGCTATGTTGCACTTCACCCAAATGTGAAAGGTGTAACTGGAAAGTACTTTGTGGATTGCAATGAATTCAAGCCAAGTGCATTTGCTAGAAATAAACAGTTAGCAAAGAAACTTTGGGATTTTAGCAACAAATTGATCAATTCAATTTCAAAAGCTTGA 975 0.3826 MVGVISLITGIAGPSGFGSASTANQVTEGIDASNLTIIITGGASGIGLETTRVLALRKAHVIIGARNMESAEKAKQQITHENKSARVDIMKLDLCSTKSVRSFVDNFIALDLPLNILINNAGIMFCPFKLSDEGIEMQFATNHLGHFLLTNLLLDKMKQTAKTTGIEGRIINLSSIAHRYTYCRKGIRFDKINDKKGYSKKKAYGQSKLANILHANELSRRLQEEGVNITANSVHPGVIMTPLMRYSSYLMHFLKVFSFYIWKNVPQGAATTCYVALHPNVKGVTGKYFVDCNEFKPSAFARNKQLAKKLWDFSNKLINSISKA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04134 324 Pfam short chain dehydrogenase 36 181 IPR002347 -
Trre13g04134 324 Gene3D - 25 321 - -
Trre13g04134 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 297 IPR036291 -
Trre13g04134 324 Coils Coil 68 88 - -
Trre13g04134 324 CDD retinol-DH_like_SDR_c_like 36 311 - -
Trre13g04134 324 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Trre13g04134 324 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Trre13g04134 324 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Trre13g04134 324 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Trre13g04134 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Trre13g04134 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Trre13g04134 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Trre13g04134 324 PANTHER RETINOL DEHYDROGENASE 14 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04134 Trre-Chr13 49199179 49205771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04134 17 297 Acyl Lipid Metabolism Gene Families AT3G46170 23.891 2.22e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04134 K11153 - gmx:100801849 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04134 13 49199179 49205771 Trre13g04134 13 49199179 49205771 ECH
Trre13g04134 13 49199179 49205771 Trre1g02720 1 22462543 22466876 PCT