Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02581 ATGGAATCTGCAAAGACTATGTTTTCTTCTTCTCCACCGTTTCCTCCAAGAATTCACCACTGGAACACTCTTCCTTCATCTTCTTATACTTCTGTTTTGATGCTCCGGGAACAAGTTGCGCCTACAGTGACCTCCTGGTGTACTAGTTTTTCAGCTCAGAATTTTCCTATTTCAGTTCTTTTACAAGAGCAGTGTGATGAGTATAGGCCTCTATTGCACATTTCTAAGAAAGACAAGACATGTCAGGCAACATTAAATACAACGCAGATGGATATGGTCTCGGTTCATGAAGAGAATGACACCAGCAACATTGATCAGGTAGCACGTGACTTCAGGCAGCACCTGCATCTCTTGCCTCGTTTGGAAAACTTATTAAGTTCCTCGCAAACAGGAGAAATGGATGCTTCTTTAACTCTACAGCTTGAAGATAGTTTGCAATGTAATGCAGTTTCTCCCTCAAAACAAGCAGCCTCAGTAGCTGAAAACTTGAGAACAATTAAAGCTGATGAGGATGCTGACAATTCGATTTCTTCTGGTTTAGCCTCTTCCATTTTGGCTGAACCTTCACTTGGAAGAAAAAAAACCATAAGGTCAACACGACATCGAGAGAGACGAGCAAAAGAGAGAAAGATACCGAAGTCAAAAGTTAAAGACAACGAAACTTACCTTGCCGGAAAGGATGCTACACAGGAAAAGCTACATGTACAAAAGGAGATAAATAAAGGATTGAATCAAAATGGTCCGTTGAACTCGTTCTTGAAGAGTCCTGAATCAAAGCAACTTTTAACTGTTGAACAAGAGTGTCAGATGGTTTCTCAGATACAGGATTTATTGAGATTGGAAGAATTGAAGACAAGTCTTCAATCTCAATTTGGAAGGGAACCAACTTTGGCTGAATGGGCCGAGGGTGCAGGGCTTAACTGTTGTCGGAAACTGAAGGCGCAACTTCGTCGTGGTAGCAAAAGCAGAGAAAAATTGATTCAAGCAAATTCACGTATGGTACATTATGTTGCTAAAAGTTACCAAGGACGCGGCCTCAGCCTTGAGGATTTATTACAGGAGGGAATTACAGGTCTCATAAAGAGTGTTAAAAAGTTTAAACCTGTATCTGGGTGCCGATTTGCTAATTATGCATATTGGTGGATAAAACAAGCAATAAGGAAGGCCATATATAATCATTCCAGGACAATCCGTTTGCCGGAAAAGGTATTTCACAAACTTAGCAAGGTATTGGATGCAAAGAAATTGTATATGGAAGAGGGAAATCTTAACCCGACCAAAGAAGAATTGGCAAGAAGGGTTGGAATGACAACAAGCAAGGTTGACAGTTTGCTACTTGTTTCAAGAATTCCAATTTCTATGCAGAAAACTGTTGGAGCCGACACAGATACACTTTTGCAGGAGATTACTGCAGACACTGCAATTGAGAGCACAAACATTAGTGTTTCAAAACAGCTTATGAGACGACATGTGCTCAACGTCTTAAATATATTACGCCCTAAAGAAAGAAGGATAATTCAACTAAGATTTGGTTTCGAGGATGGAGAACAGAGATCTTTATCAGAAATCGCAGAACTATTTGGCTTGTCTAGAGAAAGGGTTCGTCACTTGGAGACCCGGGCACTCTACAAGCTCAAGAAGTGTCTTGTCGGTCAAGGACTTGATGATTATGCAGACATGCTTATATAG 1689 0.4062 MESAKTMFSSSPPFPPRIHHWNTLPSSSYTSVLMLREQVAPTVTSWCTSFSAQNFPISVLLQEQCDEYRPLLHISKKDKTCQATLNTTQMDMVSVHEENDTSNIDQVARDFRQHLHLLPRLENLLSSSQTGEMDASLTLQLEDSLQCNAVSPSKQAASVAENLRTIKADEDADNSISSGLASSILAEPSLGRKKTIRSTRHRERRAKERKIPKSKVKDNETYLAGKDATQEKLHVQKEINKGLNQNGPLNSFLKSPESKQLLTVEQECQMVSQIQDLLRLEELKTSLQSQFGREPTLAEWAEGAGLNCCRKLKAQLRRGSKSREKLIQANSRMVHYVAKSYQGRGLSLEDLLQEGITGLIKSVKKFKPVSGCRFANYAYWWIKQAIRKAIYNHSRTIRLPEKVFHKLSKVLDAKKLYMEEGNLNPTKEELARRVGMTTSKVDSLLLVSRIPISMQKTVGADTDTLLQEITADTAIESTNISVSKQLMRRHVLNVLNILRPKERRIIQLRFGFEDGEQRSLSEIAELFGLSRERVRHLETRALYKLKKCLVGQGLDDYADMLI 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02581 562 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 152 558 - -
Trre1g02581 562 Pfam Sigma-70 region 2 326 395 IPR007627 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 PRINTS Major sigma-70 factor signature 534 545 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 PRINTS Major sigma-70 factor signature 350 363 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 PRINTS Major sigma-70 factor signature 519 534 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 PRINTS Major sigma-70 factor signature 374 382 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 PRINTS Major sigma-70 factor signature 498 510 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 Pfam Sigma-70 region 3 406 477 IPR007624 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 CDD Sigma70_r4 488 546 - -
Trre1g02581 562 Pfam Sigma-70, region 4 495 547 IPR007630 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 NCBIfam sigma-70 family RNA polymerase sigma factor 322 549 IPR014284 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 399 472 IPR013324 -
Trre1g02581 562 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 245 396 IPR013325 GO:0003700|GO:0006352|GO:0006355
Trre1g02581 562 Gene3D - 399 476 IPR036388 -
Trre1g02581 562 MobiDBLite consensus disorder prediction 191 229 - -
Trre1g02581 562 Gene3D - 73 395 - -
Trre1g02581 562 MobiDBLite consensus disorder prediction 195 211 - -
Trre1g02581 562 Gene3D - 481 561 IPR036388 -
Trre1g02581 562 MobiDBLite consensus disorder prediction 212 229 - -
Trre1g02581 562 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 458 557 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02581 Trre-Chr1 21040739 21045989 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02581 - - gmx:100306289 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02581 1 21040739 21045989 Trre13g04285 13 50488336 50492225 PCT