Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04285 ATGTTTTCTCCCTCTGCTCCATTCCCTTCTACAATTCTTCCTTCCTCTTCAGGTATGATGCCTCATGAGCAAGCTGTTCATGCAGTTTCTTATCCGTCTTCTAGTTTTTCTGCTCAGTACTTTCCTACCTCAGTTCTTTTACAAGAGCATCGCGATGAGTATAAGCCTTTACTTCATACTTATAAAGAAGACAAGACATCCCAGGCAACCTTAAATACAAGGGTAATGGATGTGACCTTAATCTGTGAGAAAAACAGCACTCGAGATGTTGATGAGTCGGCGCATAAGTTGCATATTCGGTGTCATTTACAGAACCTATTGGCTTCTTCACCGGAAGGGGATATTGTTTCTTCTTCTTCAACTATGAAACCTGCTGATGATTTTCAACGGGATGCACTTACTCTTGCTAAGCAAGCCCTATCAGCCTCAAGACAAGCCGCTGCAGTGGCTGAAGAGTTGAAATTGATTAAAGTTGTTGACAATGATGATGATGATTCACTGCCTCTTAGTCTGGAAGACTCTTCACTCGGAAAGAACAAAATCGTGAGGTCAATACGGTTTAAAGAAAGGCGATCTAAGCAGAGAAAAGTGTCAAAGTCAAAAGTTTTTTATGAAGAAAAGTACCTCACCAGAAATTCCAATGTACAAAGAAGGTTACGTGTAGAGAAAAAGTTAAAAGAAGGTCTTAACGGAAACGACGCCCTGCACTTGTTCTTATCGAGTCCTGAAACAAAGAAACTTTTGAACCTTGAAGAAGAGTCTCAATTGCTTGCTCAAATACAGGATTTGTTTAAATTGAAAGAAACAAAGATCAAGCTTCAATCTCAGTTTGGAAGGGAACCAACTTTGGCCGAATGGGCAGATGGTCTGGGACTTAGCTGCCGTGCCCTTGAGACACGGCTTCATTCTGGTAATAGAAGTAAAGACAAGCTGGTTAATGCCAACTTACGCCTTGTAGTTCACATTGCCAAATATTATCAGGGGCGTGGTCTTGACTTTCAAGACTTATTGCAGGCGGGAACTGTTGGCCTTATGAGGAGTATCGAAAAGTTCAAACCCCTAGCTGGTTGCCGGTTCAGTAGTTATGCTTACTTTTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCTCCATTCCAAAACAATCCGTATTCCGGAGAACCTCTATACCCTTTTGGGCAAGGTTTCGGAAGCAAAGAAATCGTACATTCAAGAAGGAAATATTCACCCCACCACAGAAGAACTAGCAAAAAAAGTTGGAATTACAGTAGATAGGTTGGAAATGTTGCTATTTTCTACAAGAACTCCAGTTTCGATGGAGCGACCTGTGTGGGCAGACCAGGATACAACATTCCAGGAGATTACTGCAGACTCTGCAATTGAGATCACAAATGTATGTGTTACAAAACAACTAATGCGGAGCCATGTACGCAGCCTCTTAAATATTTTGACCCCAAAAGAAAGGAGGGTAATAAGATTAAGGTTTGGTATTGAAGATGGCTATGAGAAATCTCTGTCAGAAATTGGCAAGGTTGTTGGTGTGTGTAAGGAAAGGGTCAGACAGTTGGAGAGCAAAGGATTGAACAAGCTCAAGCAGTCCCTTGTTAGTCAACAACTTGATGCATATGTAGACTTGATTGTATAG 1644 0.4136 MFSPSAPFPSTILPSSSGMMPHEQAVHAVSYPSSSFSAQYFPTSVLLQEHRDEYKPLLHTYKEDKTSQATLNTRVMDVTLICEKNSTRDVDESAHKLHIRCHLQNLLASSPEGDIVSSSSTMKPADDFQRDALTLAKQALSASRQAAAVAEELKLIKVVDNDDDDSLPLSLEDSSLGKNKIVRSIRFKERRSKQRKVSKSKVFYEEKYLTRNSNVQRRLRVEKKLKEGLNGNDALHLFLSSPETKKLLNLEEESQLLAQIQDLFKLKETKIKLQSQFGREPTLAEWADGLGLSCRALETRLHSGNRSKDKLVNANLRLVVHIAKYYQGRGLDFQDLLQAGTVGLMRSIEKFKPLAGCRFSSYAYFWIRQTIRRALFLHSKTIRIPENLYTLLGKVSEAKKSYIQEGNIHPTTEELAKKVGITVDRLEMLLFSTRTPVSMERPVWADQDTTFQEITADSAIEITNVCVTKQLMRSHVRSLLNILTPKERRVIRLRFGIEDGYEKSLSEIGKVVGVCKERVRQLESKGLNKLKQSLVSQQLDAYVDLIV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04285 547 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 231 380 IPR013325 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 Pfam Sigma-70 region 2 311 375 IPR007627 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 Pfam Sigma-70 region 3 391 460 IPR007624 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 Gene3D - 200 380 - -
Trre13g04285 547 NCBIfam sigma-70 family RNA polymerase sigma factor 309 534 IPR014284 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 ProSitePatterns Sigma-70 factors family signature 1. 335 348 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 CDD Sigma70_r4 473 531 - -
Trre13g04285 547 Gene3D - 466 546 IPR036388 -
Trre13g04285 547 Gene3D - 384 461 IPR036388 -
Trre13g04285 547 Pfam Sigma-70, region 4 479 532 IPR007630 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 132 543 - -
Trre13g04285 547 PRINTS Major sigma-70 factor signature 483 495 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 PRINTS Major sigma-70 factor signature 359 367 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 PRINTS Major sigma-70 factor signature 504 519 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 PRINTS Major sigma-70 factor signature 519 530 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 PRINTS Major sigma-70 factor signature 335 348 IPR000943 GO:0003700|GO:0006352|GO:0006355
Trre13g04285 547 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 384 457 IPR013324 -
Trre13g04285 547 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 442 543 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04285 Trre-Chr13 50488336 50492225 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04285 - - gmx:100793539 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04285 13 50488336 50492225 Trre13g04285 13 50488336 50492225 ECH
Trre1g02581 1 21040739 21045989 Trre13g04285 13 50488336 50492225 PCT