Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02529 ATGTTTAAGAAAATTATGAAAGGAGGGCATAAAAAGCCCTCCAAATCGGATTCAAGTGATCCTACTCCGTCCGGTAACAACCGTAATTCGGCTGCGCCGGTTGTTGTTAACCATGCCTCACGTGGCGGTGCCGGAGGAACTTCTGGTGCTAATTCCGCTACCGTGATGCCTATGACTTTAGCGTCCAGTACAATGGAACCAGCTCCTTTGTTCAAAGACGTGCCGGTTTCCGAGAGGCAAAACCTCTTCATTAGGAAGCTTCATATATGCTGTTTCTCGCTTGATTTCACGGATACGTTGAAGAACGTTAGGGAGAAAGAGATCAAGAGACAAGCGTTGATGGAGTTAGTTGAGTTTATCCAATCAGGTTCCGGTAAGATGTCGGAGGATTGTCAGGAAGAGATGATTAGAATGATATCTATTAACATTTTCCGGTGTTTGCCGCCGGCGTCTCATGAGAATACCGGGACAGAGCCTACTGATCCTGAAGAGGTGGAGCCTTGCTTGGAGCCAGCTTGGCCTCACTTGCAGCTTGTTTATGAGCTTCTTCTTAGATATGTGGTTTCTTCTGATACTGATACTAAGGTTGCAAAACGGTACATTGATCATTCCTTTGTGCTAAAGTTGCTTGATTTGTTTGATTCTGAAGACCCGCGTGAGCGAGAGTATTTGAAAACTATTCTGCATCGTATATATGGAAAATTCATGGTTCATAGACCATTTATTAGAAAAGCAATTAACAACATTTTTTATCGGTTTATATATGAAACTGAGAGACACAGTGGTATTGGTGAGCTTTTGGAGATTCTTGGTAGTATTATTAATGGGTTTGCTTTGCCCATGAAAGAGGAGCATAAGTTGTTTCTTGTTAGGGCTCTTTTGCCTCTGCATAAACCGAAATCGGTTTCTATGTACCACCAGCAATTGTCTTACTGCATAACTCAGTTTGTGGAGAAGGATTTCAAGCTGGCTGATACTGTCATTAGGGGACTGTTGAAGTATTGGCCTGTCACCAATTGCCAGAAGGAAGTTCTCTTCCTTGGAGAACTTGAGGAAGTCTTGGAGGCTACACAGGCTGCTGAATTCCAACGCTGCATGGTTCAACTTTTCAAACAGATTTCCTGCTGCCTCAATAGTCCTCACTTTCAGGTTGCAGAGCGAGCCCTCTTTTTGTGGAATAATGAGCATATTGTAAGCTTAATTGCTCAAAACAGGACTGTGATATTACCGATAATATTTGAAGCATTCGAGAGAAACATTGAGAGTCACTGGAACCAGGCAGTTCATGGGCTGACTGTGAATGTTCGCAAAATGTTTATTGAAATGGATGCAGAATTATTCGAAGAGTGCCAGAGGAATTATGCAGAGAAGCAGGCAAAAGCCGAAGAAGAGGCAGAACGGCGGGAATTGAACTGGAAGAGGCTTGCAGAAGCAGCTGCACAGAACGGGCCGGCGGATATGGTCACAGATTAG 1473 0.4372 MFKKIMKGGHKKPSKSDSSDPTPSGNNRNSAAPVVVNHASRGGAGGTSGANSATVMPMTLASSTMEPAPLFKDVPVSERQNLFIRKLHICCFSLDFTDTLKNVREKEIKRQALMELVEFIQSGSGKMSEDCQEEMIRMISINIFRCLPPASHENTGTEPTDPEEVEPCLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKSVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVQLFKQISCCLNSPHFQVAERALFLWNNEHIVSLIAQNRTVILPIIFEAFERNIESHWNQAVHGLTVNVRKMFIEMDAELFEECQRNYAEKQAKAEEEAERRELNWKRLAEAAAQNGPADMVTD 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02529 490 Coils Coil 447 467 - -
Trre1g02529 490 PIRSF PP2A_B56 3 489 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre1g02529 490 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 483 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre1g02529 490 MobiDBLite consensus disorder prediction 1 31 - -
Trre1g02529 490 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 69 479 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre1g02529 490 SUPERFAMILY ARM repeat 80 461 IPR016024 -
Trre1g02529 490 Gene3D - 75 478 IPR011989 -
Trre1g02529 490 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 75 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02529 Trre-Chr1 20556793 20561611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02529 K11584 - gmx:100795277 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02529 1 20556793 20561611 Trre1g02529 1 20556793 20561611 ECH
Trre13g04334 13 50948159 50948485 Trre1g02529 1 20556793 20561611 PCT