Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04334 ATGCAGGTTGCAGAACGAACCCTCTTTCTGTGTAATAATGAGCACATTGTCACTTTAATTGCCCAAAATAGGATTGTAATATTGCCCATTATATTTGAAGCATTGGAGAAAAATGTCCAGAGTCATTGGAACCAGGCTATTAATGGGTTGACTGTGAATGTTAGGAAAATGTTCCTGGAAATGGATGCTGAATTGTTTGAGGAGTGCCAGAGGCAATATTTGGAGAAAGAGGCTAAAGCCAAAGAGGTGGAAGAGCTGCGTGAATTGAATTGGAAGAGATTGGCAGATGCCGCTGCACAGAATGAGGCTGATATGATCATAACTTAA 327 0.4067 MQVAERTLFLCNNEHIVTLIAQNRIVILPIIFEALEKNVQSHWNQAINGLTVNVRKMFLEMDAELFEECQRQYLEKEAKAKEVEELRELNWKRLADAAAQNEADMIIT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04334 108 Coils Coil 66 86 - -
Trre13g04334 108 SUPERFAMILY ARM repeat 1 81 IPR016024 -
Trre13g04334 108 Gene3D - 1 97 IPR011989 -
Trre13g04334 108 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 1 98 IPR002554 GO:0000159|GO:0007165|GO:0019888
Trre13g04334 108 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 103 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04334 Trre-Chr13 50948159 50948485 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04334 K11584 - gmx:100798308 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04334 13 50948159 50948485 Trre13g04334 13 50948159 50948485 ECH
Trre13g04334 13 50948159 50948485 Trre1g02529 1 20556793 20561611 PCT