Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02447 ATGGAGGTTGAAGAAATGGAGAGAAAGGAGGTACAAGCAGAGATTCCATGGATCCCTACAACCCCAGTTAAGCCTATTGTGCCAAAATCAGCTCCGATCTGTACTCCAATGGAAGGAAACAGTCAAATCTATCATCAAGCTAATGGAGCATTTGCATGTTCTGAATTCTCACATGGTACAGTACCTGCGGTTACAATTACAGACATTGATGGTCAAAATGGCAAAATCTGTGAAAAGACAGCTTCTGATAATGTTTCATCTGCCGAATCTATGTTTCCGACGGAGGTAGCTTCGACGAGTTCTTGTGCAACACGAGTAGGAGACAATAATGGATTGAATGATCTAGTTGTTCCATCAGTTGTCTCTGAGAATTCAAGAGATCCTCATGAAACATCCGACATTGCTTGTTGTAGCCAGAGAACTTCCCAGGATGATCCTGCCAAAATGTTTGACAAGGATGGAACCCCGCCGAACAAAGAACTCTGTGACCCTGTTGTAGAATTTGCTGCTGTTTCTTCAACATTGATGGAGAATCACAACCCGGATGAGGGAAGCAGCCTCTGTACAGGTCTAAATAAAACACCAGAAAAAAAGCCGAGGAGAAAAAAGCATCGTCCCAAGGTCATTAGAGAAGGAAAACCCAAAAGAACTCCGAAGCCACCTACCCCAAAACCTGCTCCATCAAAAGAAAACACAACTGGCAAGAGAAAGTATGTGAGAAGAAAAGAATTGAACAAAACTTCTACTCCGGCAGAAGTGACAGGAGAAATTGCTGAAAAAACACCTGAAGCTACCAAAATGTCATGTCAAAGATCCTTAAATTTTGAAATAGGAACAAAAGACGAGAGCTCTGCAGACAGAGAAAATACAACTGCACTGCTAGGAAAAGAAAATGGTGTAGCCGAACAAGAAACCAATTTCGGCCTTACTTGTGATTTAAACATCTCAGCAGCTAATGTTAAGCATGCATCAAACAGTTCCATGTCATTGCCAGAAGATACACAGGCCCCAGATACATCTTCACAAAGCTCCCACCCTGAGACAAATCCAAAAGAAAATCTAACTGGCAAGAAGAAATATGCAAGAAGGAAATTGAACAAGACTTCGGCTCCTCCAGCAGAAGTTACAGGTGAATTGACTACAGAAAAGATGTCCGAATTGGCCAAACCGCCCTGTAAAAGTTACACAAATTTTGACAAAGGAAGAATGGAAGAGAGTTCTGCGGTCAAAGAAAATGCAACTACACATATGAGCGAAGAAAATGAAGTCACGGAGGGAACAAATCCAGATCTTGCGTATGATGTAAAAACTTCCATGAAGCAGGCATCAGACAGTAATGTGTTATTAACAGAAGATACGCAACCCATAAATACACCGTCAAGAAGAAAGCCCCATAGGGCAAAGCCAAAAGAAGGCCCATGTACCAAAAGGCAGTATATGAGAAGGTTAAAATTGAACAAGTCTTCCACTCCTACAGAAGTATCTGGAGACTTGCCTGGAAAAACGATGCCAGAATCTGCCAAAACTTCTTGTATGAAGTCCTTAAATTTTGACGAAGGAGCAAGAGATGAAAGTTCTGCCGACAGAGAAAATGCAAGTGTGCATCCGTGCAAAGAAACTGCAGCAATGCAAGAAATTGAGGTAGGCCTTGGCTATGATATGGAGAATTTCATGAAGCAGCCAGCAGAAAATAATTACCTGTCATTCTGTAATAATAAACAAACCCCAACTGTGCGGCCAAGCAAAGAAACTGGTGCAGTAATGCAGGAAATTGATGTAAGCCTTGACTATGATATGGAGACTTTCTTGATGCCAGAAGCAGAAAATAACTACGTATCATTTTGTAATAATGAACAAATCACAAGTACACCTCCTTCAAAAACCAATCCCCCAGGGGAAAAACCAAAAGAAAACCTGACTGGAAATAAGTATCAGAGAAGAAAACGATTGAACAAGTCTCCCACTTGTCAAACAGAAATGACAGAACAGACTGGAGCAATGATGCCAGAATCTAACGAAACGCCAATGAGAAGGTACTCAGATTTTGAGATGGGAGCGAAAGATGAAAATTCTGCACAAAAAGAAATTGTAAATGTGCAAATGGGCGATGTGTTAGAGGAACCACCTGTAGGCCTTGCCTACAATGAAGACATTTGGATCAAGCATGCATTAAATAGTTACAGGCCATTACCTGAAGATGCACAAGCCCCAAGTACAGATCCTTTAAAAGATAATCCTCCTGGAGAAAAGCCAGAAGAAAACCAAAATGGCAAGAGGAAGTGTGTGAGAAAGAAGAGATCGAAGAGGACTTCTACTCCAAGAGAAATGACAGATGAATTGACTGAACCAATTATGTCTGAACCTGCCATAGTATCGTGTAGAATGTCCATAAACTTTGACAATGGAGGAAGAGATGAAAGTAATATGTGCAATGAAAGCCTCGCCAGCGATCAAAACACCTTGGTGAAAGAGATGTCAAATAGTCACATGTCAGTATCTGAAAACACACTAGCTCCAAGTACATGCCTTCCAAAAAGCAATCCTCCTGGGACGAAGCGGAATGCCAGCAACAAAAACAAAAGAAAAGGCCTCCCAACAGCTGAGGATGGAAACATCAGTAACAGTCAAGTTTCAACAATAAATTTACAAATGGTTGGTTGCGAGAGAGAGCATTCTGAGACCACTGAACTGGTAGATAACAACAGCATGAATCTGATTGGGGCACACTATAATGGACTGCACTCATACCAGTCAAAGTTTCCGCTTCAATTTCCAAATATCCAGAAGAAAAGGAGAACCGAAAAGGAGAAAACGAACACTCATATTACATCTTCTGTGATTGCCGAAAATGGAGTACCACTAATGTTCTCTCCCCAATATGCGCAAGTGCATCCTTATGCATCAAACTACAACTCCTGGATGTATGGTTCTGGATATAATACAGCTGTATTACCAATGATAAATGCATATACAGAAAATTATATTCATAATACTCAAACATTTGACGAGTTCAGATTATCTTTGAGAAGGGTGACTGAAAGATCTCAATTTGAAGCTCAAACTTGTGAATACAATTCTCATTATAATTCTCTAATGAGAATTAGAAGCTGTATTGAACCAGATTATACTGCAAAACAACAGGAATTTTCAGACTGGCAAACAATTAGAGATGCAGAAAGACCACAAACATGCATTGATGTCTTAGCTGAAGATATGCCTGTATCATGTGCAAAAAAGAAGCAAAATAGAAAGAGAGGTGTTCTTTCCTGTTCAGCACATCCTAACACAGATGAGATGCAACAGTGCCATAATTTTGCATTGGTAAATCACAACCTGGTGCTAGGAAAGTCATCAGAAGCTGCTCGTAGACGGAAAAAAGCTCGTGATGTTGCAGCTTTAACAGCTCAATTTAGACGGCTAAACATAAACACAGGAGAGAAGGAACTTGTCTTATATAAGCAGAATGCACTTGTTCCCTTTCAGGGCTCATTTGATCCCATCAAAAAACAGCGTCCACGACCTAAAGTTGACCTTGATGACGAGACTGATAGAGTGTGGAAGCTTTTGCTGTTAGATATAAACCATGAAGGGGTTGATGGAACAGATGAAGACAAGGCCAAATGGTGGGAAGAAGAACGTAATGTATTCCGTGGACGTGCAGAATCATTTATTGCACGGATGCATCTTGTACAAGGTGACAGACGATTTTCTCGATGGAAAGGATCAGTTGTGGATTCAGTGGTAGGCGTTTTCCTCACTCAAAATGTATCAGACCATCTTTCCAGTTCTGCATTCATGGCCCTTGCTGCTCGATTTCCCAAAAAGTCAGGCAGCACGAGCACAGCATACGATGGAGAAGGCACAAGCCTGTTGAATATAGTGGAACCAGAAGAGAACACAGAATGTGATGTAAAGTTATTGAATCAATCTGTTTGCAACCAGAGTTCTATGACAGTAGATATAGTGGAGCATTCTGGCAATGAATCCTGCAGAATTACCAGTAGTCCAATCAGCTTAACAGATGAATCAAACTGCAAACTAACAGAATCACCTCAAACAAATATTAAAGAATGCCACAGTCCAATGGTTATGATTGAGGACGGAGAAGAAAAATCACGTTATGGTGCTAGGAAAGAGCTAAATGACATAGTTTCATCCCAATCCTCTGTCATTTCATCTCAAATTTCTGGAGATTTTTCAAATGATCAAAATCCTGAGAAGATAGGATCATGCTCAGATAGCAACTCAGAAATTGAAGATCTGTCAAGCACAGCAAAGTACAACGGTTGTGGTTCCTTCTGTAAGCTTCTAGAAATGGTTAGTTCAACCAGGTTTTATGAAGTTAACAGTCAAAGAAGTGAATTAACTGAGAACATGAGAGATGGAAATGCAATAGAAAGCTGGAAAAAATCAAATGTGACTCAAAGCTCTTTAGAAGAATCCATCATCCCACCCCACAACTCAGGAGCTCGTGGAGTTAACTGCTCTGATCCTTTCAAAACAGAAGCTTCGTCAAGTGGCATCTTAAAGAATAAAGACGGAAATGAGATGAATATGCCTAGTTTTCAAACAGCCGAGTCTGCAGGATATGTTAACGTTACTCATTCTCCAACTATTGCATCTCAAGTCCATCCTCAGGAACAGAGTAATCACATGCAGCAGCAAAGTTTTTTCAACATTTCTGAACAAACTCGTGATCTGATTATTCAGAAAGAAAGGGATTTAAATCTTGGTGATCACAAAGATGTTGTAAGGAGTGAAACCAATGAGATAAGTTCTGCCCCAATAAAACCAAAGAGCAAAAGTCAAGTACAGGAGGAAAAGGACAATTTTGACTGGGATAGTTTACGAATAAAAGCACAAGCTAAGGCTGGGAAAAGAGAAAAGACAGAAGACACCATGGATTCTTTAGACTGGGAGGCCTTGAGATGTGCAGATGTCGGTGAAATTGCTAAAACCATCAAAGAACGGGGCATGAACAACAGGCTTGCCGAGCGAATTCAGAAATTCCTGAATAGAGTGGTTGAAGATCATGGAAGCATTGACCTCGAGTGGCTGAGAGACGTACCACCTGACCAAGCAAAAGAATATTTGCTGAGCGTAAGAGGACTGGGATTGAAAAGTGTGGAGTGTGTGCGGCTTTTAACACTGCACCATCTTGCCTTCCCGGTAGACACAAATGTTGGACGTATAGCAGTACGCTTGGGATGGGTACCACTCCAGCCACTACCTGAGTCACTACAGTTGCATCTCCTAGAAATGTACCCAGTGTTGGAGTCAATACAAAAGTATCTCTGGCCTCGATTGTGCAAGCTAGATCAAAAAACATTATATGAGCTACATTACCAGATGATTACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGTAATGCATGCCCAATGAGAGCAGAATGTCGACACTTTGCTAGTGCATTTGCGAGTGCAAGGCTTGCCCTGCCTGGACCAGAGCAGAAGAATATAGTTAGTGTAGCTGGAAATAGTGCGACTGATGAGAACCCACCTGTAGTCATGAGTCAGTTGCCCTTGCCTCTTCCTGAGAACACAAATCAAGTGGAAGAAATTCCCCAAACAGAAGTGAGCGGACAACTGGCAAAATCTGAAGCAAATATCTGCCAACCTATCATTGAAGAGCCGGCAAGTCCAGAACCAGAATGTCCGCAAGTTGAACTAAGTGATATAGAGGATGCCTTCTATGATGACCCGTGTGAAATTCCTACCATTGAACTTAACATAGAGGAGTTCACTCTGAATTTACAAAACTATATGCAACAAAACATGGAACTTCAAGAAGGTGAAATGTCAAAGGCTCTGGTTGCTTTGAATCCACAAGCTGCATCCATTCCTGTGCCCAAGCTAAAGAATGTTAGCCGATTACGAACAGAGCATTGTGTTTATGAACTCCCGGATAATCATCCTCTTCTGGAAGGGTGGGACACACGAGAACCTGATGATCCTGGCAAATATCTTCTCGCTATATGGACTCCAGGAGAGACAGCAGATTCAACACAGGCGCCTGAATGCAAATGCAGCTTTCACGAAGAATGTGGACAGCTCTGCAACGAGAAGGAATGTTTCTCATGCAACAGTTTCCGAGAAGCAAATTCACAGATAGTTAGAGGCACACTTCTGATACCATGTCGAACAGCTATGCGTGGGAGTTTTCCACTAAATGGCACATATTTCCAAGTCAACGAGGTATTTGCTGACCATGAGTCCAGCCTTCATCCTGTTAGTGTTCCCCGAAGTTGGATCTGGAACCTCGGTAGGCGAACGGTATATTTTGGAAGCTCCACAGCATCAATATTTAAAGGTTTATCAACTCAAGAAATTCAACAGGCCTTTTGGAGAGGATATATCTGTGTACGAGGGTTTGAAAGGAAAACACGAGCACCCCGCCCTTTGATGGCTAGACTGCACTTCCCAGCTAGCAAATTGGCCCAAGCCGCTAAAGAGAAGGAAAAGAAGGAGTCAAGCCCAGCGAAGAACTCACAAGGACCAAATCCTGAAAGTACGCCGAAGAAATCACAAGGACGGAAACCAAATCCTGAAAGTCTGGCAAAGAAATCACCAGGACCAAAACCAAATCCTGATAGTCTGGCGAAGAAATCTCCAGAACCGAAGCCGAACTCTGAGCAGCCTGAACTGATTTCAAACAGTCACATCCTTCAGGAGAAAGGAACAGCCTGA 6717 0.4176 MEVEEMERKEVQAEIPWIPTTPVKPIVPKSAPICTPMEGNSQIYHQANGAFACSEFSHGTVPAVTITDIDGQNGKICEKTASDNVSSAESMFPTEVASTSSCATRVGDNNGLNDLVVPSVVSENSRDPHETSDIACCSQRTSQDDPAKMFDKDGTPPNKELCDPVVEFAAVSSTLMENHNPDEGSSLCTGLNKTPEKKPRRKKHRPKVIREGKPKRTPKPPTPKPAPSKENTTGKRKYVRRKELNKTSTPAEVTGEIAEKTPEATKMSCQRSLNFEIGTKDESSADRENTTALLGKENGVAEQETNFGLTCDLNISAANVKHASNSSMSLPEDTQAPDTSSQSSHPETNPKENLTGKKKYARRKLNKTSAPPAEVTGELTTEKMSELAKPPCKSYTNFDKGRMEESSAVKENATTHMSEENEVTEGTNPDLAYDVKTSMKQASDSNVLLTEDTQPINTPSRRKPHRAKPKEGPCTKRQYMRRLKLNKSSTPTEVSGDLPGKTMPESAKTSCMKSLNFDEGARDESSADRENASVHPCKETAAMQEIEVGLGYDMENFMKQPAENNYLSFCNNKQTPTVRPSKETGAVMQEIDVSLDYDMETFLMPEAENNYVSFCNNEQITSTPPSKTNPPGEKPKENLTGNKYQRRKRLNKSPTCQTEMTEQTGAMMPESNETPMRRYSDFEMGAKDENSAQKEIVNVQMGDVLEEPPVGLAYNEDIWIKHALNSYRPLPEDAQAPSTDPLKDNPPGEKPEENQNGKRKCVRKKRSKRTSTPREMTDELTEPIMSEPAIVSCRMSINFDNGGRDESNMCNESLASDQNTLVKEMSNSHMSVSENTLAPSTCLPKSNPPGTKRNASNKNKRKGLPTAEDGNISNSQVSTINLQMVGCEREHSETTELVDNNSMNLIGAHYNGLHSYQSKFPLQFPNIQKKRRTEKEKTNTHITSSVIAENGVPLMFSPQYAQVHPYASNYNSWMYGSGYNTAVLPMINAYTENYIHNTQTFDEFRLSLRRVTERSQFEAQTCEYNSHYNSLMRIRSCIEPDYTAKQQEFSDWQTIRDAERPQTCIDVLAEDMPVSCAKKKQNRKRGVLSCSAHPNTDEMQQCHNFALVNHNLVLGKSSEAARRRKKARDVAALTAQFRRLNINTGEKELVLYKQNALVPFQGSFDPIKKQRPRPKVDLDDETDRVWKLLLLDINHEGVDGTDEDKAKWWEEERNVFRGRAESFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAFMALAARFPKKSGSTSTAYDGEGTSLLNIVEPEENTECDVKLLNQSVCNQSSMTVDIVEHSGNESCRITSSPISLTDESNCKLTESPQTNIKECHSPMVMIEDGEEKSRYGARKELNDIVSSQSSVISSQISGDFSNDQNPEKIGSCSDSNSEIEDLSSTAKYNGCGSFCKLLEMVSSTRFYEVNSQRSELTENMRDGNAIESWKKSNVTQSSLEESIIPPHNSGARGVNCSDPFKTEASSSGILKNKDGNEMNMPSFQTAESAGYVNVTHSPTIASQVHPQEQSNHMQQQSFFNISEQTRDLIIQKERDLNLGDHKDVVRSETNEISSAPIKPKSKSQVQEEKDNFDWDSLRIKAQAKAGKREKTEDTMDSLDWEALRCADVGEIAKTIKERGMNNRLAERIQKFLNRVVEDHGSIDLEWLRDVPPDQAKEYLLSVRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPVLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMRAECRHFASAFASARLALPGPEQKNIVSVAGNSATDENPPVVMSQLPLPLPENTNQVEEIPQTEVSGQLAKSEANICQPIIEEPASPEPECPQVELSDIEDAFYDDPCEIPTIELNIEEFTLNLQNYMQQNMELQEGEMSKALVALNPQAASIPVPKLKNVSRLRTEHCVYELPDNHPLLEGWDTREPDDPGKYLLAIWTPGETADSTQAPECKCSFHEECGQLCNEKECFSCNSFREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHESSLHPVSVPRSWIWNLGRRTVYFGSSTASIFKGLSTQEIQQAFWRGYICVRGFERKTRAPRPLMARLHFPASKLAQAAKEKEKKESSPAKNSQGPNPESTPKKSQGRKPNPESLAKKSPGPKPNPDSLAKKSPEPKPNSEQPELISNSHILQEKGTA 2238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02447 2238 MobiDBLite consensus disorder prediction 617 673 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 730 784 - -
Trre1g02447 2238 SMART endo3end 1618 1790 IPR003265 GO:0006284
Trre1g02447 2238 MobiDBLite consensus disorder prediction 410 425 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 1586 1608 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 825 875 - -
Trre1g02447 2238 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 141 304 IPR044811 GO:0019104|GO:0035514|GO:0080111
Trre1g02447 2238 MobiDBLite consensus disorder prediction 265 279 - -
Trre1g02447 2238 Gene3D Hypothetical protein; domain 2 1634 1719 - -
Trre1g02447 2238 CDD ENDO3c 1638 1756 IPR003265 GO:0006284
Trre1g02447 2238 MobiDBLite consensus disorder prediction 196 212 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 2170 2188 - -
Trre1g02447 2238 Pfam Permuted single zf-CXXC unit 2015 2047 IPR028924 -
Trre1g02447 2238 SUPERFAMILY DNA-glycosylase 1218 1813 IPR011257 GO:0003824|GO:0006281
Trre1g02447 2238 MobiDBLite consensus disorder prediction 825 854 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 438 457 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 176 297 - -
Trre1g02447 2238 Pfam RRM in Demeter 2050 2150 IPR028925 -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 745 759 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 322 350 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 2220 2238 - -
Trre1g02447 2238 SMART ccc3 1791 1811 IPR003651 GO:0051539
Trre1g02447 2238 MobiDBLite consensus disorder prediction 322 507 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 122 161 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 230 247 - -
Trre1g02447 2238 Coils Coil 1921 1941 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 654 670 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 2155 2238 - -
Trre1g02447 2238 FunFam DNA glycosylase/AP lyase ROS1 1712 1820 - -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 176 192 - -
Trre1g02447 2238 Gene3D - 1720 1808 IPR023170 -
Trre1g02447 2238 MobiDBLite consensus disorder prediction 1395 1415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02447 Trre-Chr1 19782568 19792080 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02447 - - psat:127097483 2604.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02447 1 19782568 19792080 Trre1g02447 1 19782568 19792080 ECH
Trre13g04416 13 51726587 51735457 Trre1g02447 1 19782568 19792080 PCT