Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04416 ATGGAGTTTGGTGAAACAGAGAAAAAAGAGCTTAATTCACATGTTCCATGGATACCCACAACACCATTTAAGCCAATTGCTCAGAGACCAGTGCCGATCTGTAATTCTGGAGAGAGAAATCAGCTGAATTCTCATTTCAATGGAGATTTTTCATGTATTGAATCTTCAAGCGGTGGAGATGTTAACAACCGGTCAGAAACTGTTGCTGTAGCATCAGACATTGGTCATGACAATGCCAGAACTAGGGTACAGATATCCTTTGATGATAATGTTCCTAGTTCAAGTAATAGTTTTGCTCAACTTTTGGCTCAGGCAGAGGCGGCTCAGTCGTCGTCGTATTCGAATGCAGCATATGAATTTTCAGGGAACCAATTTGTTCCTGGTGTGTGGAACTCACAGTTCAACCAAAGTTATGCATTTTTATATCAGCAACAACCCTTTCTCAATTTAATTCATAACAGTTACCAAGATCCTCAGGGTACACCGTACTTGGGTTATTATGACAAGACCAATTCCCAGGTTGCTCTGCCTCCAGAAAATAACATAACATCAAAAGACAAACAAGTTGTGGAGACACAAATATGCATGGATCAAAGGGAAGACGAGAATAATGCCTCGGCTACAATGTGCAACAATTCACACAACAAACTATATGATCCTGTTGTAGACTTGACTGCTGTTTCTACACCATGCAAGGAGAACAACAACCACAATAAGGAAATACACCATGCTATTGATCTTAATGAAATACCCCAAACAAAACCGAAAAGAAGAAAGCATCGCCCCAAGGTCATAAAAGAAGGCAAACCCAAAAGAACTCCAAAGCCAGCCACTCCAAAGCCTGATCAATCAAAAGAAAACTCAACTCAAAAGAGGAAGTATGTGAGAAAGAAAGAATCAAACACAACTCCAGCAGAAGTGACAGGGGAATGCACTGAACCATTGATGACAGAGTCTGCCAAAAAGACATGTAGAAGGTCCTTAATCTTTGAAATACCAGAACAACCAAGAGATGGAAATTCTGCATGCAGAGAAGAAAATGCAACTACACGTTTTGGTGGAGAAAATGGTATAGAGGTCCAGGAAACACATGCTTTACAAGAAGATGCACAAGCCTCCAGCAGTAACGGAAAACTTCCGAATACAGGATCACAAGAAGTTCGTTCCAAGAGAAAACCATCTGGTACCGCTGAACAAGCAGACAGCAGCAGCATTAATATGATCGGGGCACAATATAATTTAATGCAGGCATACCAGTCCAAGTATTGGGCTCAATTTCCAAATGTTCAGAAGAAAAAGAGAAGTGAGAAGGGGAAATTTTCAAATACATCCAATACAACTTCCATGGCTGCTATTAAAGAAGTACAACTTGCAAGATGCTCTGACGAAAATGCTAGATCACATCCGGATGCATCAACTTCTAATGGCTGGACTACGGCTTCTGCTTCTGAATATGAAACAGCGAGACTCCTAACCATGCTAGCTACAGAAACAGCTACCTATGACAAATCTCAATCGATTGAGTACAATTTATTTTCAGGACAAAGCAGACCAACGAAAAAAAGATCCAGAGTCACTACCAGAATTCAAGATTGCACTTCACTGACCATAATTAGAAACTGTGATGCCAAACTGACTAATATTGCAAGCCTAGGCAGCTCTGATAGACAGACATTTGAGGATGCAGAAAGACCACAAACAGGCATTGATGCTCTAGTTGCGGAGATGCGTGCATCACTCACAAAAAAGAAACGGAGTAAAAAGAGAAGTGTGTCAATCAGTTCTGCATATTCTCGTATAAATGAAATGCAACAACATCTGCCCTTGCAGAACCCATTAGGTGTTGCTTGCAGAGAGAGTTGGAAAAGCGTACCTACTGTCGACGCATTAACACAGCAATTTAGGCACCTAAACATATATAGAGAAGCTAGAGAGCTTGTGTTGTGTGAACAGAATGCACTTGTCCCTTACAACCGGCAAAATGAAAAACCCAAAGGCCAGGTTCATAAATATGGCACCATCATTCCCTTTGAGGGTGTGTTTGATCCCATCAAGAAACAGCGCCCACGACCTAAAGTTGATCTTGATGAGGAAACTAATAAAGTTTGGAAGCTTCTGATGTTGGATATAAACAGTCATGGGGTTGATGGAACAGATGAAGACAAGGCCAAATGGTGGGAAAATGAACGAAATGTTTTCCGAGGAAGAGCAGAGTCATTTATTGCACGGATGCATCTTGTTCAAGGAGACAGACGTTTTTCTCGATGGAAAGGATCAGTGGTGGATTCAGTGGTTGGAGTTTTTCTCACTCAGAATGTCTCAGATCATCTTTCCAGTTCTGCATTCATGTCCCTTGCTGCTCGATTTCCACTGAAGTCAACCAGCAACTTCGATACATGCCATGAGGAAAGTGCAAGCATGATAGTCAACACACCAGAGGTGCAGATTGTGGAACCAGAAGAAAATGCAAAGCTGGAAGACATAATATTGAATCAGTCTGTTCATGAATTGAGTTCTATGACAAAAGATATCATTGAACATTCTGAAGAAAGAGAAACTGTTGACAGCAACAGCATTGATTCCTGTGGAACTGCTGGAAGCTTAAATAGCTTAAAAGATGAATCAAATTGTAAACTGTCAGAACCAGCTCAAAGCAATATTAGGGAACATAGTACAATGGAATTTGTTAATCCAGCTACTGGGAAAGGGCAAGAAAATTCATCTCACGGAGGTGTTAGGAAAGAGTTAAATGCTTTATTTTCCTCTCATTGCTCCATTGTTACATCTCAATTGTCTGGAGGTTTTTCAATTGATCAAAATCCTGAGAAGATAGGATCATTCTCAGACAGCAATGCAGAAGTAGAAGATCAGCTAAGCACAGCCGAATACAATTTTTCAAACAGTACTTTCAGTAAGCTTTTAGGAATGGCATGTTCGACCCAGGTACATGAAGTTAACAGTCAGAGAAGCAATCCAACTGAGAACTTGAGAGATTCATACGGTCAATCTGTAGCTATGAGGCATGACAACCTGGAACAGAACTTGGAAAAATCAAATGTTACTCAAAGCTCCTTAGAAGCAATCGTGACACAATGCAATGACTATAGTCTGAAAATGACCCCCGACTCTGGAGTCCTAGAACTCAACTGCTATAATCCTGTCAATTTTGAAGCCTCATCAAGTGGCTCCTCAATGAATAACATAAGCTCGAGTTCTCCAACAGAGTCTCACAGCATGCTATCCCAAGTCCATCTTCAGCAACATAGTGATCACAAGCAGCACAAAGCTTTCGACATTTCTGGACAAAGTCAAGATCTTATACAGAAATCAAGGGAATCAGGTTCTGGTGACCACAATTATGCTATGACGAATGAAAACAGTAAGTTAGATTCTTCCCCTGTAAAATCAAAAGGCAAGGAGCGCGGGAAAGAGAGAAAGGATAGCTTCAATTGGGATAGTTTAAGAATACAGGCACAAGCTAAGGCAGGGAAGAGAGAAAAGACAGAAAGCACCATGGACTCCTTGGACTGGGATGCTGTGAGACGTGCAAACGTAAATGAAATTGCTGATGCAATCAAAGAAAGGGGCATGAACAACATGCTTGCTGAACGTATTCAGAGTTTCCTGAATCTACTTGTTGAAAAACACGGAGCTATTGATCTCGAGTGGCTGAGAGATGTTCCACCTGACCAAGCAAAAGAATTCTTGCTCAGCATAAGGGGGTTGGGATTGAAAAGTGTGGAGTGCGTGCGACTATTAACACTGCACCATCTTGCTTTCCCGGTGGACACAAATGTTGGGCGTATTGCGGTGCGATTGGGATGGGTACCTCTCCAGCCACTGCCTGAGTCACTACAGTTGCATCTTCTAGAATTGTACGAGCTGCATTACCAGCTGATTACATTTGGAAAGGTCTTCTGTACAAAAAGCAAACCAAATTGTAATGCATGTCCAATGAGAGGGGAATGCAGACACTTTGCAAGTGCTTTTGCAAGTGCAAGGCTTGCCCTACCAGGACCAGAGCAGAAGAATATAGTTATCGCAAATGGAAACAATGCAACTGATCAGAACCCATCAGTAATCATCAATGAGTTGCCCCTGCCTCTCCCAGGACCGGAGCAGAAGAATATCGATATTACAACTGGAAACAATGCAACTGATCAGAACCAATCAGTAATCATCAATCAATTGCCCGTGTCTATCACTGAAAACACAAACCAAGCAGAAGAACATCAACAGACAGCAATGATCAGGCAACTTGAAACGAAATCTGAAATTGATATTTGCCAACCCATTATTGAAGAGCCAGCAACTCCAGAACCAGAATGCTCTGAAGTATTTGAAAATGATATAGAGGATGCTTTCTATGATGAATCAGATGAAATTCCAACCATCAAACTAGACATAGAAGAGTTCACTACGAATTTACAAAATTATATGCAAGAAAACATGGAACTTCAAGAAGGTGAAGTGTCAAAGGCCTTGGTTGCTCTAAATCAAGAAGCTGCTTACATTCCTACACCGAAGCTGAAGAACATCAGCCGGTTGCGCACAGAGCATTCTGTTTATGAACTCCCAGATACACATCGTCTTCTGGAAGGGTGGGAAAAGCGAGAACCTGATGATCCGGGCAAATACCTTCTAGCTATATGGACTCCAGGTGAGACAGCGAATTCTATTCAACCACCAGAAGGAAAATGCAGCGCTCAGGAACGTGGCCAGCTCTGTAATGAGGAGGAATGTTTTTCATGCAACAGTTTCCGTGAAGCTAATTCACAAATAGTTCGAGGGACAATCCTGATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAACGGAACCTACTTTCAAGTCAATGAGGTTTTCGCAGACCATGAATCAAGTCTTAACCCGATTAGCGTTCCCAGAAGTTGGATATGGAACCTAAATAGGAGAACAGTGCATTTTGGAACCTCCATACCAACCATATTCAAAGGTTTAACAACACCAGAAATTCAACAGTGCTTCTGGAGAGGGTTTGTCTGTGTGCGAGGATTTGACAGGCAAACACGAGCACCCCGTCCTCTGAAAGCTAGACTACATTTCCCAGCTAGCAAATTGGCCAAGACCAAAGAGAAGACAAAAAAAGACTCCACGGCCGCAAACCCACAAGGATTAAATTCAAAACAAAATGCAGACCAGCCAGAATTTCTTGCCAGCATTCCCAACTTGCGACAGAACAACGGATCCTGA 5238 0.4191 MEFGETEKKELNSHVPWIPTTPFKPIAQRPVPICNSGERNQLNSHFNGDFSCIESSSGGDVNNRSETVAVASDIGHDNARTRVQISFDDNVPSSSNSFAQLLAQAEAAQSSSYSNAAYEFSGNQFVPGVWNSQFNQSYAFLYQQQPFLNLIHNSYQDPQGTPYLGYYDKTNSQVALPPENNITSKDKQVVETQICMDQREDENNASATMCNNSHNKLYDPVVDLTAVSTPCKENNNHNKEIHHAIDLNEIPQTKPKRRKHRPKVIKEGKPKRTPKPATPKPDQSKENSTQKRKYVRKKESNTTPAEVTGECTEPLMTESAKKTCRRSLIFEIPEQPRDGNSACREENATTRFGGENGIEVQETHALQEDAQASSSNGKLPNTGSQEVRSKRKPSGTAEQADSSSINMIGAQYNLMQAYQSKYWAQFPNVQKKKRSEKGKFSNTSNTTSMAAIKEVQLARCSDENARSHPDASTSNGWTTASASEYETARLLTMLATETATYDKSQSIEYNLFSGQSRPTKKRSRVTTRIQDCTSLTIIRNCDAKLTNIASLGSSDRQTFEDAERPQTGIDALVAEMRASLTKKKRSKKRSVSISSAYSRINEMQQHLPLQNPLGVACRESWKSVPTVDALTQQFRHLNIYREARELVLCEQNALVPYNRQNEKPKGQVHKYGTIIPFEGVFDPIKKQRPRPKVDLDEETNKVWKLLMLDINSHGVDGTDEDKAKWWENERNVFRGRAESFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLAARFPLKSTSNFDTCHEESASMIVNTPEVQIVEPEENAKLEDIILNQSVHELSSMTKDIIEHSEERETVDSNSIDSCGTAGSLNSLKDESNCKLSEPAQSNIREHSTMEFVNPATGKGQENSSHGGVRKELNALFSSHCSIVTSQLSGGFSIDQNPEKIGSFSDSNAEVEDQLSTAEYNFSNSTFSKLLGMACSTQVHEVNSQRSNPTENLRDSYGQSVAMRHDNLEQNLEKSNVTQSSLEAIVTQCNDYSLKMTPDSGVLELNCYNPVNFEASSSGSSMNNISSSSPTESHSMLSQVHLQQHSDHKQHKAFDISGQSQDLIQKSRESGSGDHNYAMTNENSKLDSSPVKSKGKERGKERKDSFNWDSLRIQAQAKAGKREKTESTMDSLDWDAVRRANVNEIADAIKERGMNNMLAERIQSFLNLLVEKHGAIDLEWLRDVPPDQAKEFLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKNIVIANGNNATDQNPSVIINELPLPLPGPEQKNIDITTGNNATDQNQSVIINQLPVSITENTNQAEEHQQTAMIRQLETKSEIDICQPIIEEPATPEPECSEVFENDIEDAFYDESDEIPTIKLDIEEFTTNLQNYMQENMELQEGEVSKALVALNQEAAYIPTPKLKNISRLRTEHSVYELPDTHRLLEGWEKREPDDPGKYLLAIWTPGETANSIQPPEGKCSAQERGQLCNEEECFSCNSFREANSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHESSLNPISVPRSWIWNLNRRTVHFGTSIPTIFKGLTTPEIQQCFWRGFVCVRGFDRQTRAPRPLKARLHFPASKLAKTKEKTKKDSTAANPQGLNSKQNADQPEFLASIPNLRQNNGS 1745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04416 1745 MobiDBLite consensus disorder prediction 1714 1745 - -
Trre13g04416 1745 Coils Coil 1469 1489 - -
Trre13g04416 1745 SUPERFAMILY DNA-glycosylase 735 1328 IPR011257 GO:0003824|GO:0006281
Trre13g04416 1745 MobiDBLite consensus disorder prediction 368 402 - -
Trre13g04416 1745 MobiDBLite consensus disorder prediction 254 268 - -
Trre13g04416 1745 CDD ENDO3c 1176 1285 IPR003265 GO:0006284
Trre13g04416 1745 Pfam Permuted single zf-CXXC unit 1563 1594 IPR028924 -
Trre13g04416 1745 MobiDBLite consensus disorder prediction 269 300 - -
Trre13g04416 1745 SMART endo3end 1156 1305 IPR003265 GO:0006284
Trre13g04416 1745 SMART ccc3 1306 1326 IPR003651 GO:0051539
Trre13g04416 1745 MobiDBLite consensus disorder prediction 1132 1151 - -
Trre13g04416 1745 Pfam RRM in Demeter 1597 1697 IPR028925 -
Trre13g04416 1745 Gene3D - 1258 1323 IPR023170 -
Trre13g04416 1745 MobiDBLite consensus disorder prediction 460 479 - -
Trre13g04416 1745 MobiDBLite consensus disorder prediction 235 253 - -
Trre13g04416 1745 MobiDBLite consensus disorder prediction 229 320 - -
Trre13g04416 1745 MobiDBLite consensus disorder prediction 1099 1131 - -
Trre13g04416 1745 Gene3D Hypothetical protein; domain 2 1164 1257 - -
Trre13g04416 1745 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 175 1710 IPR044811 GO:0019104|GO:0035514|GO:0080111
Trre13g04416 1745 MobiDBLite consensus disorder prediction 1059 1086 - -
Trre13g04416 1745 MobiDBLite consensus disorder prediction 1699 1745 - -
Trre13g04416 1745 MobiDBLite consensus disorder prediction 1059 1152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04416 Trre-Chr13 51726587 51735457 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04416 - - psat:127125690 2151.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04416 13 51726587 51735457 Trre13g04416 13 51726587 51735457 ECH
Trre13g04416 13 51726587 51735457 Trre1g02447 1 19782568 19792080 PCT