Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02083 ATGCCAATTTCACCTGCAGCTGTGATCGTTCCATTGGGTATTCTATTCTTCGCTTCTGGTCTCATCGTTAATCTCATTCAGGCAGCATGCTTTGTGATTTTGAGGCCAATTTCAAAGAATTTGCACAGACGGATCAACAGGTTGCTGGCAGAACTTCTTTGGCTGGAGCTTGTTTGGATTTTTGATTGGTGGGCTGGAGTCAAGATCCAAGTATTCACCGATCGCGAAACCTTTCGTTTCTTGGGTAAAGAACATGCTCTTGTCATATCCAATCACAAAAGTGATATTGATTGGCTTGTTGGATGGATTTTAGCTCAGCGTTCAGGTTGCCTTGGTAGCACCCTTGCTGTGATGAAGAAATCATCAAAGTTTCTGCCGGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCTTGGAGAGAAATTGGGCCAAGGATGAAAGCACATTAAAGTCAGGCCTACAGCAACTGAGGGATTTCCCTCTTCCCTTTTGGTTGGCTCTCTTTGTAGAAGGAACTCGCTTTACACAAGCCAAACTATTAGCCGCTCAGGAATATGCAACCTCGACTGGATTGCCTGTTCCTAGAAACGTTTTGATTCCAAGAACTAAGGGGTTTGTTTCAGCAGTAAGTCATATGCGCTCATTTGTTCCGGCAGTTTATGATGTAACAGTGGCAATTCCTAAGAGTTCACCCGCTCCTACAATGCTAAGACTCTTCAAGGGACAACCTTCTGTGGTGCATATGCATATTAAACGGCATTTGATGAAGGATTTACCAGAAGCAGATGAAGCTGTAGCTCAATGGTGTCGAGACGTATTTGTGGCTAAGGATGCTTTGTTAGACAAACATATAGTTGATGACAAATTCAGTGATCATGAGCCACGCGATCTCGGTCGACCAATAAAGTCTCTTCTGGTTGTCATAACATGGATTTTTGTCGTTATTGCGGGGACTGTTAAGTTGCTTCAATGGTCTTCACTACTATCCTCTTGGAAGGGTATTGCATTTTCGGTATTTAGTTTGGCAATCGTCACTGCACTCATGCAAATCTTGATTATGTTCTCACAATCTGAACGTTCAAACCCTGCCAAGGTTTCACCTTCAAAGCCCAAACATAGAGAAGAATTGCAGGGTAGTGATGACAAACAAGAGTAG 1161 0.4289 MPISPAAVIVPLGILFFASGLIVNLIQAACFVILRPISKNLHRRINRLLAELLWLELVWIFDWWAGVKIQVFTDRETFRFLGKEHALVISNHKSDIDWLVGWILAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQQLRDFPLPFWLALFVEGTRFTQAKLLAAQEYATSTGLPVPRNVLIPRTKGFVSAVSHMRSFVPAVYDVTVAIPKSSPAPTMLRLFKGQPSVVHMHIKRHLMKDLPEADEAVAQWCRDVFVAKDALLDKHIVDDKFSDHEPRDLGRPIKSLLVVITWIFVVIAGTVKLLQWSSLLSSWKGIAFSVFSLAIVTALMQILIMFSQSERSNPAKVSPSKPKHREELQGSDDKQE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02083 386 MobiDBLite consensus disorder prediction 367 386 - -
Trre1g02083 386 Pfam Acyltransferase C-terminus 239 312 IPR032098 -
Trre1g02083 386 CDD LPLAT_LCLAT1-like 58 253 - -
Trre1g02083 386 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 43 288 - -
Trre1g02083 386 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 9 354 - -
Trre1g02083 386 SMART plsc_2 86 208 IPR002123 GO:0016746
Trre1g02083 386 Pfam Acyltransferase 83 228 IPR002123 GO:0016746
Trre1g02083 386 MobiDBLite consensus disorder prediction 360 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02083 Trre-Chr1 16594684 16601273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02083 6 385 Miscellaneous Gene Families AT3G57650 74.211 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02083 K13523 - gmx:100812696 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02083 1 16594684 16601273 Trre1g02083 1 16594684 16601273 ECH
Trre13g03499 13 42628705 42633142 Trre1g02083 1 16594684 16601273 PCT