Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03499 ATGGCTATTGCAGCGGCTGCTGTCGTCGTTCCAGTTGGCCTTCTCTTCTTCGCTTCCGGCCTCATCGTTAATCTCATTCAGGCAATATGCTACGTCCTTATAAGACCGTTGTCAAAGAATTTGTACAGAAGGATCAATCGGGTGGTGGCAGAATTGTTGTGGCTTGAGCTTGTTTGGCTTATTGATTGGTGGGCTGGAGTTAAGGTCCAAATATTTACGGATCGCGAAACTTTTAATTTAATGGGTAAAGAACATGCACTTGTCATATGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTTAGCTCAGCGTTCGGGTTGCCTTGGCAGTACTCTAGCAGTGATGAAGAAATCATCAAAGTTTCTACCGGTAATTGGCTGGTCGATGTGGTTTTCTGAGTATCTTTTCCTGGAGAGAAGTTGGGCCAAGGACGAAAACACCTTGAAATCAGGTATAAAGCGGTTGAGTGATTTCCCTCTTCCGTTTTGGTTGGCTCTCTTTGTAGAAGGAACACGTTTTACACAGGTCAAACTATTAGCTGCTCAGGAATATGCAACCTCCACTGGATTGCCTGTTCCTAGAAACGTTTTGATTCCTAGAACTAAGGGGTTTGTTTCGGCTGTAAGTCATATGCGCTCATTTGTTCCGGCCATTTATGATGTAACGGTGGCTATCCCCAAGAGTTCACCTGCTCCTACGATGCTAAGACTCTTACAAGGAAAACCTTCTGTGGTGCAAGTTCATATCAAGCGACATTTGATGAATGAATTGCCAGAAACAGATGAAGCTGTTGCTCAGTGGTGTAGAGATATCTTTGTGGCGAAGGATGCATTGTTAGACAAGCATGTAGCTGAGGATACTTTCAGTGATCAAGAGCTGCAGGATGCTCGTCGACCAATAAAGTCTCTTGTGGTAGCTCTATCTTGGGCTTTTGTGGTTGTTGCTGGCAGTGTGAAGTTCCTACAATGGTCTTCATTGCTATCATCATGGAAGGGTGTTGCATTTTCGACTTTTGGTTTAGCAGTTGTTACTGGCCTCATGCACATCTTGATTTTATTCTCACAGGCCGAGCGTTCAAACCCTGCCAAGGTAGCCCCTGCAAAACCGAAAAACAAGGAGGAACAACCTTTGGCTACAAATGACAAACAACAATAG 1164 0.4424 MAIAAAAVVVPVGLLFFASGLIVNLIQAICYVLIRPLSKNLYRRINRVVAELLWLELVWLIDWWAGVKVQIFTDRETFNLMGKEHALVICNHRSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERSWAKDENTLKSGIKRLSDFPLPFWLALFVEGTRFTQVKLLAAQEYATSTGLPVPRNVLIPRTKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMLRLLQGKPSVVQVHIKRHLMNELPETDEAVAQWCRDIFVAKDALLDKHVAEDTFSDQELQDARRPIKSLVVALSWAFVVVAGSVKFLQWSSLLSSWKGVAFSTFGLAVVTGLMHILILFSQAERSNPAKVAPAKPKNKEEQPLATNDKQQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03499 387 CDD LPLAT_LCLAT1-like 62 253 - -
Trre13g03499 387 MobiDBLite consensus disorder prediction 370 387 - -
Trre13g03499 387 Pfam Acyltransferase 81 228 IPR002123 GO:0016746
Trre13g03499 387 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 9 341 - -
Trre13g03499 387 MobiDBLite consensus disorder prediction 362 387 - -
Trre13g03499 387 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 39 286 - -
Trre13g03499 387 SMART plsc_2 86 208 IPR002123 GO:0016746
Trre13g03499 387 Pfam Acyltransferase C-terminus 239 312 IPR032098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03499 Trre-Chr13 42628705 42633142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03499 3 377 Miscellaneous Gene Families AT3G57650 75.733 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03499 K13523 - gmx:100812696 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03499 13 42628705 42633142 Trre13g03499 13 42628705 42633142 ECH
Trre13g03499 13 42628705 42633142 Trre1g02083 1 16594684 16601273 PCT