Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02043 ATGCTAAGGACAACAACATCACTAGCTTCACAACAATACTCTACAAGCAGGATTCCTCCTTCATGGCTGCCACTACATCGCAATCACTCTAATTCCCGCATAACCTTTACTACCCATCATCATCATCATCATAACTCCCTAGTAGTGAAGTGCTCGAACATGACGGTGACGCCTAGTATATCGGTTAACGACAGTAATCTGTTGGTTCATGGGAAGACTATACTGAGTGGAGTTCCAGACAACATTGTGCTAACACCAGGAACTGGAAAGGACATTGTGACTGGTGCTTTTATTGGTGCCAATGCTTCCAACACCAAAAGCCTCCATGTCTTTCCCATTGGTGTCTTACAGGATCTTCGATTCTTGTGTTGCTTCCGGTTCAAGTTATGGTGGATGACACATAGAGTGGGAACTTGTGGGAGGGATATCCCTTTGGAGACTCAATTCATGCTTATAGAGATCAAAGAAAGTAGAAATCAACAGCAAAATTCTCCAGTTATCTATACTGTCTTGCTTCCTCTATTGGAAGGCCAGTTCCGTGCTGTCCTACAAGGAAATGACAAAAATGAGATAGAGATTTGCCTGGAAAGTGGAGATCCTGCTGTTGAGACCAATCAAGGCCTTCACCTGGTCTACATGCACGCTGGGACCAACCCCTTCGAAGTAATCAACCAAGCTGTCAAGGCTGTTGAAAAACAAATGCAAACTTTCCTTCACCGTGAGAAAAAAAGATTGCCGTCTTTTCTTGATTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTATTGAGGAAGGCTTGAAAAGCCTATCGGAGGGAGGCACATCTCCACGGTTCCTCATCATTGATGACGGTTGGCAACAGATCGAGAGTAAACCAAAAGATGCTGATTGTGCTGTACAAGAAGGAGCACAGTTTGCTACTAGGTTGACTGGTATTAAAGAAAACACTAAATTTCAAAAGAATGGAGAGAGAAATGGCCTGAAGCATGTTGTGGATCAAACAAAGCAACGTCACAATGTGAAACATGTTTATGTTTGGCATGCTCTAGCTGGTTATTGGGGTGGAGTGAAGCCAGCAGCAATTGGAATGGAACATTACGACACTTCCTTGGCATACCCAATACATTCTCCAGGCGTCCTAGGAAACCAACCAGACGTTGTCATGGACAGCTTGGCTGTCCATGGCTTAGGTCTGGTTCATCCCAAGAAGGTCTTCGATTTCTACAACGAGCTTCATGCTTACTTAGCTTCGTGTGGAGTAGATGGAGTGAAGGTTGATGTGCAAAACATTATTGAAACCCTTGGTTCGGGACATGGTGGCAGAGTCTTAATCACACGTAGCTATCATCAAGCACTTGAAGCTTCTATTGCTCGAAATTTTCGCGACAATGGATGCATTGCCTGTATGTGTCACAATACTGATGGCCTTTATAGTGCCAAGCAGACTTCTGTTGTGAGAGCCTCCGATGACTTTTACCCACATGATCCTGCTTCCCACACCATTCATGTTTCGTCTGTTGCATATAACTCGATTTTCCTTGGGGAATTCATGCAACCTGACTGGGACATGTTTCATAGTTTACATCCGGCGGCCGAGTATCATGCTGCAGCTCGTGCAATCAGTGGAGGTCCAATTTATGTCAGTGATAAGCCAGGAAGGCACAATTTTGATCTTCTAAAGAAACTAGTTCTTCCTGATGCCTCAGTTCTTCGAGCTCAGTTACCTGCCCGACCTACTCTCGACTCTCTCTTTGTTGATCCAGCAAGAGATGGAACTAGCTTGCTCAAAATATGGAATTTGAACAAATGTAGTGGAGTTGTTGGTGTATTTAACTGTCAAGGTGCTGGATGGTGCAAGATAGAGAAGAAAAACCGTATTCATTGCGAGACCCCTGGGACACTTAGTGGCTCTGTATGTACTTCTGATGTTGACCTCATTGCTCAAGTAGCTGGTGCTGATTGGAACGGCGATGCAGTTGTTTATGCTTACAGATCAGGTGACGTAATTCGCCTACCAAAAGGTGCTTCAATGCCAGTGACTCTAAAAGTTCTCGAGTATGAACTTCTCCATTTCTATCCAATCAAGGAAATCGCACAAGGTATTTCATTTGCACCGATAGGGCTATTGGATATGTTTAACACTGGAGGAGCTGTGGAACACTTTGAAATCCACAGAGCAAACAATTCTAAAAAAGAAATAACAGCATCTGTTAGCCTCAGAATGAGGGGAAGTGGAAAATTCGGAGTTTACTCCTCCCAGAAGCCATTGAAATGTATGGTGGATAAAAATGAAACTGAGTTCAACTATGAGTCAGAATCTGGGTTGACAACTTTCTACATCCCAGTTCCAGTTGAGGATATGTATATATGGCCAATAGAGATACATGTATAA 2412 0.4374 MLRTTTSLASQQYSTSRIPPSWLPLHRNHSNSRITFTTHHHHHHNSLVVKCSNMTVTPSISVNDSNLLVHGKTILSGVPDNIVLTPGTGKDIVTGAFIGANASNTKSLHVFPIGVLQDLRFLCCFRFKLWWMTHRVGTCGRDIPLETQFMLIEIKESRNQQQNSPVIYTVLLPLLEGQFRAVLQGNDKNEIEICLESGDPAVETNQGLHLVYMHAGTNPFEVINQAVKAVEKQMQTFLHREKKRLPSFLDWFGWCTWDAFYTDVTAEGIEEGLKSLSEGGTSPRFLIIDDGWQQIESKPKDADCAVQEGAQFATRLTGIKENTKFQKNGERNGLKHVVDQTKQRHNVKHVYVWHALAGYWGGVKPAAIGMEHYDTSLAYPIHSPGVLGNQPDVVMDSLAVHGLGLVHPKKVFDFYNELHAYLASCGVDGVKVDVQNIIETLGSGHGGRVLITRSYHQALEASIARNFRDNGCIACMCHNTDGLYSAKQTSVVRASDDFYPHDPASHTIHVSSVAYNSIFLGEFMQPDWDMFHSLHPAAEYHAAARAISGGPIYVSDKPGRHNFDLLKKLVLPDASVLRAQLPARPTLDSLFVDPARDGTSLLKIWNLNKCSGVVGVFNCQGAGWCKIEKKNRIHCETPGTLSGSVCTSDVDLIAQVAGADWNGDAVVYAYRSGDVIRLPKGASMPVTLKVLEYELLHFYPIKEIAQGISFAPIGLLDMFNTGGAVEHFEIHRANNSKKEITASVSLRMRGSGKFGVYSSQKPLKCMVDKNETEFNYESESGLTTFYIPVPVEDMYIWPIEIHV 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02043 803 PANTHER - 54 800 IPR008811 -
Trre1g02043 803 Gene3D Aldolase class I 251 570 IPR013785 -
Trre1g02043 803 SUPERFAMILY (Trans)glycosidases 248 574 IPR017853 -
Trre1g02043 803 Pfam Raffinose synthase or seed imbibition protein Sip1 60 786 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02043 Trre-Chr1 16261735 16266781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02043 54 605 Glycoside Hydrolase AT3G57520 77.917 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02043 K06617 - gmx:100807861 1312.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02043 1 16261735 16266781 Trre1g02043 1 16261735 16266781 ECH
Trre13g03446 13 42193918 42198134 Trre1g02043 1 16261735 16266781 PCT