Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03446 ATGACGGTCACACCTAAGATCTCAGTTAACGATGGAAACTTGGTTGTCCATGGAAAGACCATACTGAAAGGAGTCCCAGAAACCGTTGTGCTTACTCCAGGTTCTGGTAATGGTCTTGTTACCGGCGGTGCATTCATTGGTGCTACAGCTTCCCATACCAAAAGCCTCCATGTTTTTCCCATTGGTATCTTAGAGGGGCTGCGGTTCATGTGTTGTTTCCGGTTCAAGTTATGGTGGATGACACAGAGAATGGGAACTTGTGGAAGGGATATTCCTTTGGAGACTCAATTCATGCTTATAGAGAGCAAAGACAGTGAAGGGGAAGATGAAAATTCTCCAATCATCTACACTGTCTTGCTACCACTATTGGAAGGTCCATTCCGATCTGTTCTACAAGGCAATGAAAAAAGCGAGATCGAGATTTGCTTTGAGAGTGGGGATCATGCTGTTGAGACAAATCAAGGCCTTCACATGGTTTACATGCATGCTGGCACCAACCCTTTTGAAGTTATCAACCAAGCTGTCAAGGCTGTGGAAAAGCACATGCAAACATTTCATCACCGTGAGAAGAAAAAACTACCATCTTTTCTTGACTGGTTTGGTTGGTGCACATGGGATGCTTTCTATACTGATGTAACAGCTGAGGGTGTTGAGCAAGGCCTGAAAAGTCTATCAGAGGGAGGTACACCTCCGCGGTTCCTCATCATTGATGATGGTTGGCAACAGATTGAAAGTAAAGCGAAGGATCCTGGTTGTGTTGTACAAGAAGGAGCACAGTTTGCTACAATGTTGACTGGGATTAAAGAGAATGCTAAATTTCAAAAGAAGAAGAATGGACAGAACAACGAACAGTCGGAGCAGACATCGGGTCTTAAACATCTTGTAGATGGAGTAAAGCAACATCACAATGTCAAAAATGTTTATGTATGGCATGCACTAGCTGGTTATTGGGGTGGAGTGAAGCCTGCAGCAACTGGGATGGAACATTATGACACTGCCTTGGCATACCCGGTACAGTCGCCAGGAGTACTTGGAAACCAACCCGACATTGTCATGGACAGCTTGTCTGTACATGGCCTCGGTCTAGTACATCCGAAGAAGGTTTTCAACTTCTACAACGAGCTCCATGCTTACTTAGCTTCATGTGGAGTAGACGGGGTGAAGGTAGATGTGCAAAATATTATTGAAACCCTTGGTGCTGGACACGGTGGCCGAGTCTCACTTACACGTAGCTATAATCATGCGCTCGAGGCTTCCATTTCTCGTAACTTTTCTGACAATGGATGCATCGCATGTATGTGTCACAACACTGATGGCCTTTACAGTGCTAAACAGACTGCCGTTGTAAGAGCCTCCGATGATTTTTACCCGCGTGACCCCGCTTCCCACACCATCCATATTTCATCTGTTGCATACAATTCACTTTTCCTTGGAGAGTTTATGCAACCAGATTGGGACATGTTCCATAGTTTACATCCAGCAGCAGAATATCATGCTGCAGCTCGTGCAATTGGTGGATGTCCAATTTATGTCAGTGATAAGCCAGGCAACCATAATTTTGATCTTCTTAAGAAACTGGTTCTTCCTGACGGTTCGGTTCTCCGCGCTAAGTTACCTGGTAGGCCTACGCGCGACTCTCTCTTTGTTGATCCGGCAAGAGATAGGAATAGCTTGCTCAAAATATGGAACATGAACAAATGTAATGGAGTTGTTGGCGTATTTAATTGCCAAGGTGCTGGGTGGTGCAAGGTAGAGAAGAAAACTCGTATCCACGATACATCTCCTGGTACTCTCACTGCTTCTGTTTGTGCCTCTGATGTTGATCTCATCAACCAAGTAGCTGGTGCTGAATGGCATGGGGAGACTATTGTTTTTGCTTACAGATCAGGTGAGGTGATTCGACTACCAAAAGGGGTTTCGATTCCAGTCACACTAAAGGTTCTGGAGTTTGAACTTTTCCATTTCTGTCCAATCCAAGAAATAGCACCAAGTATATCATTTGCAGCAATAGGCCTAATGGAAATGTTCAACACTGGAGGAGCTGTGGAAGAGGTTGAAATCCACACAGCCTCTGATAACAAACAAGAACTTTTTGATGGCGAGGTTGTATCGGAACATACAACTTCTCTCAGTCCTAACCGGACTACAACAGCAACTATTTCTCTAAAGGTCAGAGGAAGTGGCAAGTTTGGAGTTTACTCCTCTCAGCGTCCGCTCAAGTGCACGGTAGATGGCGCTGAAACTGACTTCAACTATGAGTCAGAGACTGGGTTGACAACCTTCACCATCCCAGTTCCTCAAGAAGAGATGTACAAATGGTTCATTGAGATCCAAGTTTAA 2340 0.4483 MTVTPKISVNDGNLVVHGKTILKGVPETVVLTPGSGNGLVTGGAFIGATASHTKSLHVFPIGILEGLRFMCCFRFKLWWMTQRMGTCGRDIPLETQFMLIESKDSEGEDENSPIIYTVLLPLLEGPFRSVLQGNEKSEIEICFESGDHAVETNQGLHMVYMHAGTNPFEVINQAVKAVEKHMQTFHHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVEQGLKSLSEGGTPPRFLIIDDGWQQIESKAKDPGCVVQEGAQFATMLTGIKENAKFQKKKNGQNNEQSEQTSGLKHLVDGVKQHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTALAYPVQSPGVLGNQPDIVMDSLSVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYNHALEASISRNFSDNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGNHNFDLLKKLVLPDGSVLRAKLPGRPTRDSLFVDPARDRNSLLKIWNMNKCNGVVGVFNCQGAGWCKVEKKTRIHDTSPGTLTASVCASDVDLINQVAGAEWHGETIVFAYRSGEVIRLPKGVSIPVTLKVLEFELFHFCPIQEIAPSISFAAIGLMEMFNTGGAVEEVEIHTASDNKQELFDGEVVSEHTTSLSPNRTTTATISLKVRGSGKFGVYSSQRPLKCTVDGAETDFNYESETGLTTFTIPVPQEEMYKWFIEIQV 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03446 779 SUPERFAMILY (Trans)glycosidases 196 527 IPR017853 -
Trre13g03446 779 Gene3D Aldolase class I 199 526 IPR013785 -
Trre13g03446 779 Pfam Raffinose synthase or seed imbibition protein Sip1 7 762 IPR008811 -
Trre13g03446 779 PANTHER - 1 777 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03446 Trre-Chr13 42193918 42198134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03446 1 554 Glycoside Hydrolase AT3G57520 82.523 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03446 K06617 - gmx:100807861 1385.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03446 13 42193918 42198134 Trre13g03446 13 42193918 42198134 ECH
Trre13g03446 13 42193918 42198134 Trre1g02043 1 16261735 16266781 PCT