Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01904 ATGGCGGGAACCGCCCATTTACTCATCCTCACGGCGCATTCCCCCACCACTTCCTCATTTCCTCGTCCAAACCCTCTATATCTCGCTTCCCGCCGCTGTCATCTTCACTCTTCCGCTGTTAAACCCCTCACTCTACGCCCCGCTGTTTCTTTCCCATCTCCCTTCAGAGCCTGTGCTCAATCCCATCAGATAGATGGTAGTGGTAGTGGAGGCAAAGAGACAAAAGGACTGACTTGGGTGGAACCCATTTTGAGATTTGCTAGGGGCAATGTTTTACCCTTAGCTCTGATTTCTGCGGTGACGTTGGGATTAACATATCCTAGTCTTGGTTGCGCTGTTGACAAATATCATGTGTCCAAAATTGGGCCGTTTGGAATTTTTGTTATCTCAGGGTTGGTGTTGCGAAGTGAAGAAATTGGTGCAGCTGTAGAAGCATGGCCTGTAGGACTCTTTGGGCTAGTATCTATTTTATTTCTTACACCATACTTTTCTAGGCTAATATTGCAAATTCAGCTCCAACCCCAAGAATTTATTACAGGGCTTGCCATATTTAGCTGTATGCCAACTACATTATCAAGTGGTGTTGCACTTACCCAGCTTGCTGGGGCAAATTCTGCACTGGCTCTTGCAATGACAGTAATATCTAACTTGTTAGGAATATTAATTATTCCATTTTCCATCACAAAATTTGTAGCTAGTGGAGTTGGCGTGACTTTACCCACCAAGCAGTTATTTAAAAGCCTTGTTCTTACCATATTAATCCCCCTTATTTTGGGAAAGGTTCTACGTGAATCTTTTAAAGGTGTTGCTGACTTTGTTGACAGAAACCGTAAGCTTTTCTCAGGGATCAGTGCATTTTTCCTTAGCCTGGTACCATGGATACAAGTGAGCAAGTCAAGGTCACTGCTGCTAATGGTGAAGCCCAAAGTTTTTCTTGTAGCTATTGGACTGGGAGCACTTCTTCATGTGACCTTATTGGTATTCAATAGCATTGCCGTCCGGAGTCTTTCAGTTATCTCAGGTGGTGAAAAATCAACTTTTTCCCGTGAAGAAAATGCCAATGCACTCATACTCGTTGCAAGCCAGAAAACATTACCAGTAATGGTAGCAGTTATAGAGCCACTTTGTGGTGCATTTGGAGAATCTGGGCTACTGGTTCTTCCTTGTATCGCAACACATCTAATCCAGATTATCGTGGACTCTTTTCTCGTAAACTTCATGCGTCGCAAAGACAATCCCAATAATGTCAAGTTGGCTTAA 1260 0.4357 MAGTAHLLILTAHSPTTSSFPRPNPLYLASRRCHLHSSAVKPLTLRPAVSFPSPFRACAQSHQIDGSGSGGKETKGLTWVEPILRFARGNVLPLALISAVTLGLTYPSLGCAVDKYHVSKIGPFGIFVISGLVLRSEEIGAAVEAWPVGLFGLVSILFLTPYFSRLILQIQLQPQEFITGLAIFSCMPTTLSSGVALTQLAGANSALALAMTVISNLLGILIIPFSITKFVASGVGVTLPTKQLFKSLVLTILIPLILGKVLRESFKGVADFVDRNRKLFSGISAFFLSLVPWIQVSKSRSLLLMVKPKVFLVAIGLGALLHVTLLVFNSIAVRSLSVISGGEKSTFSREENANALILVASQKTLPVMVAVIEPLCGAFGESGLLVLPCIATHLIQIIVDSFLVNFMRRKDNPNNVKLA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01904 419 Gene3D - 75 411 IPR038770 -
Trre1g01904 419 FunFam Probable sodium/metabolite cotransporter BASS4, chloroplastic 81 411 - -
Trre1g01904 419 PANTHER SOLUTE CARRIER FAMILY 10 MEMBER 7 75 414 IPR016833 -
Trre1g01904 419 Pfam SBF-like CPA transporter family (DUF4137) 91 409 IPR016833 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01904 Trre-Chr1 15245544 15257423 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01904 K14347 - gmx:100779161 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01904 1 15245544 15257423 Trre1g01904 1 15245544 15257423 ECH
Trre13g04397 13 51550657 51554190 Trre1g01904 1 15245544 15257423 PCT