Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04397 ATGGGGGCCTCGTTGTCGAACCTTGGATCCAACGGTTCGACCATCGGTCCTAGTCTCGGCGATATCCCGGAAAATTGTGTTGCTCGTGTTTTTCTTCATCTTACTCCGCCTGAGATTTGTAACTTAGCTCGTCTTAATCGCGCTTTTCGCGGCGCTGCTTCCGCTGATTCCGTTTGGGAAACTAAGTTACCTTCTAACTACCAACATCTTCTCCGTTTAATGCCTGAAAAATTTCACAATCTTTCTAAAAAAGATATTTTCGCTCTTCTTTCTAAGCCGTTACCGTTTGATGACGGTAATAAGCAATTGTGGCTTGATAGGGTTACTGGTAGGGTTTGTTTATCGATTTCAGCAAAAGGTTTGTTGATTACTGGAATTGATGATCGGAGATACTGGACTTGGGTTCCAACTGAAGAATCTAGGTTCAATGTTGTAGCATATTTGCAGCAAATATGGTGGTTTGAAGTGGACGGGGAGGTCGACTTTCCATTTCCTGCTGATAGTTATACACTTTCCTTTAGGCTTCACCTTGGACGATTTTCCAAAAGGCTTGGTCGGCGCGTATGCAATTATGAACAGACCCATGGTTGGGATATAAAGCCTGTAATATTTCAGTTGTCAACTTCGGATGGTCAGCAAGCATCGTCTGAGTGCTGCTTGGATGAAACTGAGCACGATGATACATATGGAAATCATAAACGGGGATATTGGGTAGATTACAAGGTAGGCGAGTTTATTGTGAGTGGATCTGAACCTACAACTAAAGTTAGATTCTCCATGAAACAGATTGATTGTACACACTCGAAAGGTGGGCTTTGTGTAGATTCTGTATTTATCATACCTAGCGATTTGAGAGACCGCAAGGGAGGCGGCTTTTTGAAATGA 885 0.4294 MGASLSNLGSNGSTIGPSLGDIPENCVARVFLHLTPPEICNLARLNRAFRGAASADSVWETKLPSNYQHLLRLMPEKFHNLSKKDIFALLSKPLPFDDGNKQLWLDRVTGRVCLSISAKGLLITGIDDRRYWTWVPTEESRFNVVAYLQQIWWFEVDGEVDFPFPADSYTLSFRLHLGRFSKRLGRRVCNYEQTHGWDIKPVIFQLSTSDGQQASSECCLDETEHDDTYGNHKRGYWVDYKVGEFIVSGSEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSDLRDRKGGGFLK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04397 294 Pfam Phloem protein 2 112 281 IPR025886 -
Trre13g04397 294 SUPERFAMILY F-box domain 17 82 IPR036047 GO:0005515
Trre13g04397 294 CDD F-box_AtSKIP3-like 19 64 - -
Trre13g04397 294 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Trre13g04397 294 PANTHER F-BOX PROTEIN PP2-A15 7 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04397 Trre-Chr13 51550657 51554190 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04397 - - gmx:100807328 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04397 13 51550657 51554190 Trre13g04397 13 51550657 51554190 ECH
Trre13g04397 13 51550657 51554190 Trre1g01904 1 15245544 15257423 PCT