Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01088 ATGACGGACAACAACTCCAATCCCGCTGACTCCGCCGCCGCTAGCGATTCGTCGCGACCTTCATCGACGTGCATCCGAATAGGTGATCGGCAACTTTTTAAAGTTGAGCTCCGACCAGATGAGACCACAATCGTATCGTGGAAGAAGCTTCTGAAAGACGCCAATAAGGATAACATTGGATCCACTTCTGCTGCTCCTGAGCAAGTTCCGAAGATGAACCCTGCGCTCGAAGCTAGAATCGCTCCTGGACAAACTGAGAAGAAAGAAGAAGATGCTCCCCAGACAAACCGGTTCAGTGCTGTAATAGAGAAAATTGAACGGCTTTACATGGGTAATGATAGTAGTGATGAGGAGGATCTACCAGTTGTTCCTGATGATCAGTATGACACAGAAGACTCTTTCATTGACGATGCTGAGCTGGATGAGTATTTTGAGGTTGATAATTCGGCTATCAAACATGATGGTTTCTTTGTTAATAGGGGGAAATTGGAACGCATAAGTGAACCTCCGGTTTTACCTAATCAGCCAGCAAAGAAAAGGTGCCGGAAAGATACATTGAAGAATCCAGGGGAGAACGTTGATGGACATGTATCAAATAAACATGCAAAAGTGGGCAAGACAGCTGCTGGAAAGACTGCATCATTATCTGCGAAGAATACATTTAATTCCTCACAGAATTTGGCTGTACCTGGTGAAGGTTATGAAGATTTGAAAAAGAAAACGACTGATAGTAGACCAATTTCAAATCCGTCTGTCTGTATGAAAGAATCAAGTAATGCTGTCCCTTCTGTGGTTGTCTGTTTGAATGTGCCTTCTGTTGCAGAAGTCAAAGCTGCTGACAAACAGACGACAGGAGTACTTCAATCTAAGAACAGAGTGGATAAATATAACGATGCAAGTGGAGTGCATGATACTTCTCATCAGAAGTACCTAGAAAAAGGTGTTTCTTCCAAATCCCATCCTGGAAGAACCCCAAGTAGTGATGGTTTAGAAAATACAGGTGGATCAAAAGATAAAAGTGGCATCAATGAGCTACCAGATCTTAACTTGTCTGAGGGAAAATCTGTGATGCAAGGACCAAAATCTAAAAACATACTCAAAAAAGATAGCTCCAGTGTGAGGCCAAAATCTACAATTCTTGAGAAAGCTATTCAAGATTTGGAGAAAGCGGTCGCAGAATCAAGACCGCCAACTATGGAAAACCAGGAGGTTGATAGCACATCCCAAGCTATCAAACGGAGATTACCCAGGGAAATAAAGCTAAAACTTGCTAAAGTTGCGAGATTAGCGCAGGCGAGCCATGGCAAAGTATCACAGGAGTTAATTAATCGTCTTATGAGCATTCTTGGGCACCTGATTCAGCTCAGAACACTAAAGAGAAACTTAAAAATTATGATCAATGTGGGTTTGTCTGCAAAGAAAGAGAAAGATGATAGGTTTCAACAAAAAAAGAAGGAAGTTGTTGAGATGATAAAGATGCAGGCGCCATCTATTGAATCTGAGCAGCAAGCTGGAGCATCTGGTGATCAAGAATTGGGTCCTGATGGAAAAGCAATACCTAAAAGTAATTTTAGTATGGACACTGCATTGGAAGACAAGATTTGTGATCTCTATGACCTTTTTGTTGATGGATTGGATGAAACTGCAGGTCCCCTAGTCAGAAAGTTGTATTCTGAGCTAGCAGAACTATGGCCAAATGGTGGCATGGACAGCCACGGAATCAAACGTGGAATTTGCCGGGCAAAAGAGAGGCGCAGAGCACTACACAGAAGAAATAAGGATCAGGAAAACATTAAGAAGAAAAAGTTATTGGTACCTAAGCAGGAGGAGAATGTCCAATCTGATGGTAGTTCACAACAGAGCGTGCGAAAGCAATTAGCTCCAGAATTCACCAGTCATTCTCCATTGAATAAGGGAGTTTCTAATACAGTTACAGATGTCCGGGTTCTCCAACCCCCTGTGAATGGTCCGAGAAAAGAGAAAGCAAAGGGGAGTTCAAGCCGTTCCCTAGATGATGTCAGGGTTGCAGGCGGTGCTTTGATTAAGAAGAGAAAGACAGAAAATGAGTCGGAGGGAACTCATTTTCGCCCTGAGAAGCTGGCTTCTTTGAAGGGAGAAGAAAAACCTAGGCCCCCGAAGCAGTCTGCAGTTGTTCCCTCCAAATCAAACCTTCATCGAGCATCACAACCCGGTGTTGAACAATCAAGCTGA 2211 0.4315 MTDNNSNPADSAAASDSSRPSSTCIRIGDRQLFKVELRPDETTIVSWKKLLKDANKDNIGSTSAAPEQVPKMNPALEARIAPGQTEKKEEDAPQTNRFSAVIEKIERLYMGNDSSDEEDLPVVPDDQYDTEDSFIDDAELDEYFEVDNSAIKHDGFFVNRGKLERISEPPVLPNQPAKKRCRKDTLKNPGENVDGHVSNKHAKVGKTAAGKTASLSAKNTFNSSQNLAVPGEGYEDLKKKTTDSRPISNPSVCMKESSNAVPSVVVCLNVPSVAEVKAADKQTTGVLQSKNRVDKYNDASGVHDTSHQKYLEKGVSSKSHPGRTPSSDGLENTGGSKDKSGINELPDLNLSEGKSVMQGPKSKNILKKDSSSVRPKSTILEKAIQDLEKAVAESRPPTMENQEVDSTSQAIKRRLPREIKLKLAKVARLAQASHGKVSQELINRLMSILGHLIQLRTLKRNLKIMINVGLSAKKEKDDRFQQKKKEVVEMIKMQAPSIESEQQAGASGDQELGPDGKAIPKSNFSMDTALEDKICDLYDLFVDGLDETAGPLVRKLYSELAELWPNGGMDSHGIKRGICRAKERRRALHRRNKDQENIKKKKLLVPKQEENVQSDGSSQQSVRKQLAPEFTSHSPLNKGVSNTVTDVRVLQPPVNGPRKEKAKGSSSRSLDDVRVAGGALIKKRKTENESEGTHFRPEKLASLKGEEKPRPPKQSAVVPSKSNLHRASQPGVEQSS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01088 736 MobiDBLite consensus disorder prediction 296 316 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 716 736 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 167 251 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 496 518 - -
Trre1g01088 736 PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS 11 728 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 319 339 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 177 201 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 610 649 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 290 372 - -
Trre1g01088 736 Pfam HPC2 and ubinuclein domain 125 164 IPR014840 -
Trre1g01088 736 MobiDBLite consensus disorder prediction 589 608 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 677 711 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 586 736 - -
Trre1g01088 736 MobiDBLite consensus disorder prediction 212 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01088 Trre-Chr1 8200716 8213055 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01088 - - psat:127092110 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01088 1 8200716 8213055 Trre1g01088 1 8200716 8213055 ECH
Trre1g01088 1 8200716 8213055 Trre5g03582 5 34041616 34048665 PCT