Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00497 ATGGCTTCACAACTATCCCACCATAATATTCAAGGTCTAACACAAGAAGAATTCAAAGAACTAGAACCAATCATAAAAAAATACCACATATTAGAACCAACACCAAACACATGTACATCAATCATAACCTACAAAATTGAAGCACCATCAAGCATAGTGTGGCCATTTGTTAGAAGCTTTGAGAATCCACAAAAATACAAACATTTTGTCAAAGGTTGTAACATGAAAGGCGATGGAAATGTTGGAAGTATAAGAGAAGTGACCGTTGTTTCAGGTTTGCCGGCTTCGACGAGCACCGAAAGACTAGAGATTTTGGATGATGATAAACATGTACTAAGTTTTAGAGTTGTTGGTGGCGAACACCGTCTTCAAAACTACCGATCGGTCACTTCGGTTAATGAATTTGTCAACAATGAAGGTAAGGTTTATACTATTGTTTTGGAATCTTATATTGTTGATATTCCACATGGAAACACTGAAGAAGATACCAAGATGTTTGTTGACACTGTTGTCAAGCTTAATCTTCAGAAACTTGGAGTTGTTGCTATGAGTTCATGTTCATCCATGCATGGACAATAA 579 0.3661 MASQLSHHNIQGLTQEEFKELEPIIKKYHILEPTPNTCTSIITYKIEAPSSIVWPFVRSFENPQKYKHFVKGCNMKGDGNVGSIREVTVVSGLPASTSTERLEILDDDKHVLSFRVVGGEHRLQNYRSVTSVNEFVNNEGKVYTIVLESYIVDIPHGNTEEDTKMFVDTVVKLNLQKLGVVAMSSCSSMHGQ 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00497 192 Gene3D - 2 191 IPR023393 -
Trre1g00497 192 Pfam Polyketide cyclase / dehydrase and lipid transport 45 178 IPR019587 -
Trre1g00497 192 CDD PYR_PYL_RCAR_like 45 178 - -
Trre1g00497 192 PANTHER - 37 178 - -
Trre1g00497 192 SUPERFAMILY Bet v1-like 38 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00497 Trre-Chr1 3713418 3713996 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00497 K14496 - gmx:100778183 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01018 15 7958540 7960194 Trre1g00497 1 3713418 3713996 ECH
Trre1g00497 1 3713418 3713996 Trre1g00497 1 3713418 3713996 ECH