Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05397 ATGAAGCTCAGCAACAACTTGATCGGAATTCTGAATTTCCTAACCCTAATTCTTTCAATTCCAATTTTAGTGATGGGAGTATGGTTACACAAACAAGCCAACACTGAATGCGAAAGATGGTTAGAAAAACCCATTATTGCCCTTGGCGTTTTTCTCTTAATTGTTTCTCTAATGGGTTTAATTGGTGCTTGTTGTCGTGTTTCATGGCTTCTTTGGTTCTATCTTCTTTTCATGTTCTTACTCATTCTTCTTCTCTTTGTTTTCACCATTTTCGCTTTTATTGTTACTAACGAAGGTGCTGGTCAAAAACTTTCGAATAAAGGTTATAAAGAGTATAGACTTGGTGATTATTCTAATTGGTTGCAGAAAAGGGTTAATGATAATGGAAATTGGAATAAGATTAGGAGTTGTTTACAATCTGGAAAACTTTGCTCTGATTTTCATTCTAAATTTCTCAATGATACTGTTGATAAATTCTATACTGAACATTTATCTGCTCTTCAGTCTGGATGTTGCAAGCCTTCGAACGACTGTGGTTTTACTTATGTGAACCCAACAACCTGGACAAAGACCGGAAATGTTACTTATACCAACCCTGACTGTGATTCTTGGGCGAATGATCCAAATGTTCTGTGCTTCGATTGTCAATCTTGCAAGGCTGGCTTACTACAAAACCTCAAGACTGATTGGAAGAAGGTGGCTGTTGTCAATATCATATTCCTGATTTTCCTAGTCATTGTGTACTCCATTGGTTGCTGTGCATTCAGGAATAACAGGAAGGACAATTGGAAGAGATATTAA 801 0.367 MKLSNNLIGILNFLTLILSIPILVMGVWLHKQANTECERWLEKPIIALGVFLLIVSLMGLIGACCRVSWLLWFYLLFMFLLILLLFVFTIFAFIVTNEGAGQKLSNKGYKEYRLGDYSNWLQKRVNDNGNWNKIRSCLQSGKLCSDFHSKFLNDTVDKFYTEHLSALQSGCCKPSNDCGFTYVNPTTWTKTGNVTYTNPDCDSWANDPNVLCFDCQSCKAGLLQNLKTDWKKVAVVNIIFLIFLVIVYSIGCCAFRNNRKDNWKRY 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05397 266 ProSitePatterns Transmembrane 4 family signature. 49 71 IPR018503 GO:0016020
Trre15g05397 266 PRINTS Transmembrane four family signature 38 64 - -
Trre15g05397 266 PRINTS Transmembrane four family signature 65 93 - -
Trre15g05397 266 PRINTS Transmembrane four family signature 6 29 - -
Trre15g05397 266 PANTHER TETRASPANIN-8-RELATED 1 261 IPR044991 GO:0009734|GO:0016020
Trre15g05397 266 Pfam Tetraspanin family 6 254 IPR018499 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05397 Trre-Chr15 63054980 63056762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05397 2 262 Miscellaneous Gene Families AT2G23810 67.050 2.90e-133 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05397 - - gsj:114382334 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05397 15 63054980 63056762 Trre15g05397 15 63054980 63056762 ECH
Trre15g05397 15 63054980 63056762 Trre11g02380 11 28355181 28356544 PCT