Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05242 ATGTGGAACTCTTTCTGGCGATCTAGAGATCGTTTCTCCTTGGATCAACTCAGGTACTTCACTGATCAATTGACAAAAGTTCAAGTTGTTAACGAGGTTAATAAGGATTTTGTTATTGAGGCTCTTAGATCAATTGCGGAGTTGATGACATATGGTGACCAACATGACCCGAGCTATTTTGAATACTTCATGGAAAAACAAGTCATGGGCGAGTTTGTTCGTATTCTAAAACTTAGCAAGACTGTTAGTGTTCCTCTTCAGTTGCTGCAAACAGTTAGCATTTTGGTCCAGAACCTAAGGAATGAGCATGCTATATACTATTTGTTTAGTAACGAACATATAAACTACCTGATAACTTATTCGTTTGACTTTCAAAATGAAGAGCTGTTGTCTTACTACATATCCTTTTTAAGAGCAATAAGTGGGAAATTGAACAAGAATACGGTTTCACTGCTTGTGAAGATTCGCGGTGACGAAGTAGTTTCATTTCCACTGTATGTTGAGGCCATACGCTTTGCCTTTCATGAGGAGAACATGGTTCGCACTGCAGTACGAGCTGTGACCCTTAATGTTTATCATGTTGGAGACGACTCTGTAAATAGATACATATCCAGCATACCTCACAAAGATTATTTCTCAAACCTGATTTCATTTTTTAGGAAGCAGAGCATGGATTTAAATAAGCTGGTCTCTCATACACTGATAAACCCAGGCCCAGATTCAACCTCTACAATTCTTGCTGCTATAGATGAAATTGAGGACAACCTATACTACTTTAGTGATATTGTTTCTGCTGGAATTCCTGATGTTGGTAGCCTAATTACAGACAACATTTTGACGGTTTTGATATTTCCATTACTTCTTCCTTCTCTGAGGATAGCAATTGATAATGACATACAAAGTGACGTTGTCACTTCTCTATACTTACTATGTTGCATTCTGAGGATAATCAAAATTAAAGATTTGGCAAATACCATAGCTGCTGCTCTTTCTTATCCCTCAGAGGCCTTTGCAAAAAGTTCTGGGGGTAAATTCAATAGCCATATATCTGGTCATGGTTTCCCATCTGAATACCTAGTGTCAAATAATCATAATCTTACCAAGTCTGATATAAGACACTCAATGTTTAATGTTCCACACTCTTCTAGTTCTTCAGGCTTTCATCCAGAAGGTGTTCTCATGCAAAATGATTATAGCAATTCAAATTTGTCTTTAAGGGATGTTTTGCTTGCATATGTAACAAAAGGAGATGATATACAAGTATTGGGTTCTTTGAGTGTACTTGCTACACTACTGCGAACTAAAGAACTTGATGAATCAATGCTAGATGGGCTTGGAATTCTTCCGCAGCGCAAACAACATAAGAAGCTCTTATTGCAAGCTTTAGTTGGTGAGAGTTCAGGTGAAGAGGAACTTTTTTCTTCCAAAAGCAGCTTGACAAGGGATAGCACTGGTAGTGATATTGATGCGTATCACGAAAAAATCAAGGATCGGTACGGAATATCTTGTCAGTCTTCTGTTGTTGGAAATAGCCCTCATGCAAATAGATTTCAGGTGATTGATGCATTGGTGAGCCTTTTTTGCCGCTCTAATATATCCGCGGAGACTCTATGGGAGGGTGGTTGGCTTTTGCGTCAGTTGCTTCCTGACAGTGAATCAGAATTCAACAGCCATCACCTTGAATTGTTGAAAGTTTCTTACAACAATTGTGCTGCTGCTCTTGTAGAGGAGGTTAAAGGCATCTGGACTGACTTCCTTATTTCTGTTTTATGTGATGAGTGGCGAAAGTGCAAAAGAGCAATGGAATCATCATCTCCTCCGAAAGAACCAAACTGCGTGCTTTTGCTGCCACATCCACATTATAAATTCTCTTTAGAAGATAATACTCCAAAGGGATCATCATTTGCTGCGGGAGAAAGAATGCAGGAACTGGTCAAGGTATTTGTACTACTCCACCAACTTCAATTATTCACTCTTGGGAGAGCTTTACCTGAGCAACCTCCAATTGACCCTACTGGCGAACTTCCCACAAATTGTCGTGCGCAGACTTCTGGGCTTGATGCATCAGGCCCAAAGGCAGGCACTGAAATCAGCCTTGTTAATGCAGTGCCTTGTAGAATTGCTTTCAAGAATGGCAAAGAACACTATTTTTGTTTTCGAGCAATCTCTTTAGGAATATCTGGCTGGCTTGTTCTTGCAGAAGAATTGCCATTACAAAAGTCCCATGGAACCGTTCGGGTCACTGCACCTTTGGCCGGGTGTGATCCCAGGATTGATGATACACATTCAACATGGTTACACTTGCGGATCCGGTCATCCTCTTTACCCTTTTTAGATCCTGCCAAATCGAACGACTATGGGAGAATGAAATCAAAAAGTTTGGTTGATGGAAGATGGACATTGGCGTTTAGGGATGAGCAGTCTTGCAACTCTGCTTTAGGGATGATTGTTGAAGAGATCAATATTCTGAGTGATGAGGTTCATAGAAGACTCAAACCTTTGCTCAACCTTGAAACTGCAATAGATTTATCAAGCACAAATTTGTGTGTTCCTGAGGATTCCTCTAATAGAATACTTCCCCAATCATTGTAA 2592 0.3997 MWNSFWRSRDRFSLDQLRYFTDQLTKVQVVNEVNKDFVIEALRSIAELMTYGDQHDPSYFEYFMEKQVMGEFVRILKLSKTVSVPLQLLQTVSILVQNLRNEHAIYYLFSNEHINYLITYSFDFQNEELLSYYISFLRAISGKLNKNTVSLLVKIRGDEVVSFPLYVEAIRFAFHEENMVRTAVRAVTLNVYHVGDDSVNRYISSIPHKDYFSNLISFFRKQSMDLNKLVSHTLINPGPDSTSTILAAIDEIEDNLYYFSDIVSAGIPDVGSLITDNILTVLIFPLLLPSLRIAIDNDIQSDVVTSLYLLCCILRIIKIKDLANTIAAALSYPSEAFAKSSGGKFNSHISGHGFPSEYLVSNNHNLTKSDIRHSMFNVPHSSSSSGFHPEGVLMQNDYSNSNLSLRDVLLAYVTKGDDIQVLGSLSVLATLLRTKELDESMLDGLGILPQRKQHKKLLLQALVGESSGEEELFSSKSSLTRDSTGSDIDAYHEKIKDRYGISCQSSVVGNSPHANRFQVIDALVSLFCRSNISAETLWEGGWLLRQLLPDSESEFNSHHLELLKVSYNNCAAALVEEVKGIWTDFLISVLCDEWRKCKRAMESSSPPKEPNCVLLLPHPHYKFSLEDNTPKGSSFAAGERMQELVKVFVLLHQLQLFTLGRALPEQPPIDPTGELPTNCRAQTSGLDASGPKAGTEISLVNAVPCRIAFKNGKEHYFCFRAISLGISGWLVLAEELPLQKSHGTVRVTAPLAGCDPRIDDTHSTWLHLRIRSSSLPFLDPAKSNDYGRMKSKSLVDGRWTLAFRDEQSCNSALGMIVEEINILSDEVHRRLKPLLNLETAIDLSSTNLCVPEDSSNRILPQSL 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05242 863 PANTHER UNCHARACTERIZED 1 838 IPR039272 -
Trre15g05242 863 Pfam Uncharacterised conserved protein 42 192 IPR019155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05242 Trre-Chr15 61744289 61753253 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05242 K19513 - gmx:100786267 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05242 15 61744289 61753253 Trre15g05242 15 61744289 61753253 ECH
Trre15g05242 15 61744289 61753253 Trre3g02302 3 21186879 21201360 PCT