Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05147 ATGGCTTCAACTTCCATAATTTCAATGTCTGTTCCAGTAACCTGTGCCACCAGCAAGAAGATAGAGGCACCAACCTCTCAAGCATTCTTGAAGGCACCATTGAGTTTGAAGCCATCATCAAAGTCCAATGGAAGGTTTCAATTTCAAGTGAAAGCATCTCTTAAAGAGAAAGTTGTTACAGGACTTACTGCAGCTGCATTAACAGCTTCAATGATTGTTCCTGATGTTGCTGAAGCTGCTACTGTTTCACCTTCTCTCAAGAATTTCTTGCTCAGTATTGTTTCTGGTGGTGTTGTTGTTGCTGCCATTCTTGGTGCTGTTATTGCTGTTTCCAATTTCGACCCTGTCAAGCGAACCTGA 360 0.4222 MASTSIISMSVPVTCATSKKIEAPTSQAFLKAPLSLKPSSKSNGRFQFQVKASLKEKVVTGLTAAALTASMIVPDVAEAATVSPSLKNFLLSIVSGGVVVAAILGAVIAVSNFDPVKRT 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05147 119 Pfam Photosystem II reaction centre X protein (PsbX) 82 118 IPR009518 GO:0009523|GO:0015979|GO:0016020
Trre15g05147 119 Gene3D Single helix bin 81 119 - -
Trre15g05147 119 PANTHER OS07G0673550 PROTEIN 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05147 Trre-Chr15 61112322 61112681 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05147 - - vra:106767477 119.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05147 15 61112322 61112681 Trre15g05147 15 61112322 61112681 ECH
Trre15g05147 15 61112322 61112681 Trre3g02478 3 24138216 24138581 PCT