Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05139 ATGACTGGAATAGTAAAAGAAGAAGATGTACTTAGAGCTGATGTTAAATCTACATTGTCATCAAAAGATGATAATAGTGGTAGTAGCCAACTACTAAGGCTGCAGTATCAAGTTACTAAATTGTTTAAGGGTTTTTCAAGTTCACCTGATCTTCAAAATCAAAACACAAATTACAATCCTGAAATCCTCACTACTCTCAAGCGTCAATGGGCTGCAAACTTTCACTTGAAGTACATGGGTCAAAAGTCTTGGAAGGAGCCCTCACGACTGTTTGAGAGCATGGTGGTTGTTGGACTTCACCCTAATTGTGATGTTCAGGCACTGCATAGGCAATTTGTTGATAGAAAGCTTGAAGGATCTGACAAATTGAGAAGTGATCTTGGTTGTCAGAATCAATCTCGCGCAGAATCCAATATTGAACCTCAGGTCTTGTTTGTTTATCCTCCAGAAAAACGGCTGCCTCTTAAACGCAAGGATCTTCTTTCTTTCTGTTTCCCCGGAGGCTTGGAGGTTCAAGCTGTTGAGAGAACCCCTTCCATGAGTGCATTGAATGAAATTTTTTTCGGGCAGGAACACCTTAAACAAATGGATCTTTCATTTGTATTCAGGTTACAGGGTTCTGACAATTCAACACTTTATGGGTGTTGTGTTTTGGTTGAAGAACTAGTCCAAAAGCCATCTGGATTGCTATCTCTGATTTCTGACAAGCAACCATCCTACTCTTCTTTAAGACGTTATATATTAACCACTCAGAGATGTTACTGCATTCTTTCAAGACTTCCATTTTTTGAACTACACTTTGGTGTATTAAATAGCATCTTCACTCAAGAAAGGTTAGAGAAGTTGACGAAAGGTGTTGGAGATTCAAATTTAGAATTTGTTGAAGTTAGCTACGATGAAGAGAACTCAGAGGGAAATTCAGAGAGTGTGTTGGTAAGCGATGATATAATAGAACACAGGTTTCATGAAAATTCAATAAGTTCTCAATCAAGAGCAATAACATCTACATCTGAAAACATTGTTGGTGATGATCCCCCGGAGAACTTAAAGGTTGATGGAGAGCTGCAGTCTTATAAGGAGAGAATAGATTATGACAGTGATGTGCCTACTGAGCATGAAACTTATAGGACAGAAACCAAAGAAGAATCTGGCCCTACAATTTCTGAAGATAGTGATGGTCAACCAGAGAACCACATGGTTGATGATGGAGAGCTGCAGTCTGATAAGAAGAGAATAGATTATGAAAGTGTTGTGCCTACTGAGCATGAAACTAATAGAACAGCAGCCAAAGAAGTATCTGGCCCTACAATTTCTGAAGATAGTGATGGCCAACTAGAGAACCTAATGGTTGATGGAGACCTGCAGTCTTGCAAGAAGAGAATAAATTATGACAGTGTTTTGCCTAATGAGCATAAAACTGAAAGGACAGGAGTCGAAGAAGAATCTGGCCCTACAATTTCTGAAGATAGTGATGGTCAGCCGGAGAACCTAATGGTTGATGGAGACCTGCACTCTTATAAGGAGAGAATCGATTATGACAGTGTTGTGCTTACTGAGAATGGAACTGATAGGACAGCAGCCAAAGAAGAAACTGGCCCTGCAATTTCTGAAGATACTGATTGTCATCAGGAGAGCCTAATGGTTGATGGGGAGCTGCAGTCTTATAAGAAAATAATAGATTATGACAGTGTTGTGCCTACTGAGCATGAAACTGATAGGACAACAGCCAAAGAAGTATCTGGCCCTACAATTTCTGAAGATAGTAATGGTCAACCAGAGATCCTAGCGGTTGATGGAGAGCTGCACTCTTATAAGGAGAGAATAGATTATGACAGTGTTGTGCCTGCTGAGCATGAAACTGATAGGACAACAGCCACAGAAGAATCTGGCCCTATAAATTCTGAAGATAGTGATCTGAATGGAGATGCTTTTACAGCCAAGAAAGAATTGGAAGATAGGAATTTACCCGATGCTATTTTGCCCCTCGTGCATTGTTGCCAGTATGAAAGCTCTGAATCATCTTGCAGTTTTCAAGGCTCACCTTGTGAAGACCGAAATTTCAGGAGTGACATTGATGATAATGAGGCAGAAGATGCATCTTTTTCTGGCCAAGAGAAGTTAGATGACTTAAATGATATTCTTGATTGGGCTGTGGAAAATGACCATGGACCCCTACAAATTATATGCAAGTATTACCAGCTAAGTTGTCTTGCCAGGGGTTCAGCACTCACATTTCATCCTTTGGAGCACCTGCATCCCTTGGAATATCATAGACCAGCCGTGACAGTCTTATGTCGTACTGGTTCAACAATTGATTTGGAAAATTTCAGCACTGGTCTGGATTTAGCAGATGCACAAAACACTCTTGTGGTGGAAGAGGCAACTTCGTTGTCTGTGTGGACTATAGCTTGCTTATGTGGCACCTTAAGACTTGAAAATGTGTTGACATTCTTAGCAGGAGTTCTGCTGGAGAAGCAGATACTTGTTGCCTGTTCTAATTTGGGAATCCTATCTGCTGCAGTTTTATCAGTTATTCCGCTAATCCAGCCTTATAGATGGCAAAGCCTGCTAATGACAGTTTTGCCGAATGACATGCTTGAGTTTTTAGATGCACCTGTCCCATTTATAGTTGGTATCAAGAACAAGAACAAGACCAGTGAAGCCCAGTCAAAGTTCACCAATGTTATTGTGGTTGATGCCAACAGAAACCAGGTGACGTCACCAACAATGCCACAACTGCCAAGACAAAAAGAGCTAATATCTTCCTTACGCCCTTATCATGCCACTCTTGTAGGAGAAAGTTACTTGGGAAGGAGAAGGCCGGTGTATGATTGTACAGAAATGCAGATTGGAGCTGCAAAGGGGTTCCTTTCGGTGTTGAGGTCTTATTTGGATTCTCTTTGCTATAACATTCGTTCTCACACAATTACCAATGTACAATCAAATGACGATAAGGTATCTTTGCTTTTGAAGGAGAGTTTCATCGACTCATTCCCGTATCGCGATCGGCCTTTCATGAAGCTTTTCGTGGATACACAGCTTTTTTCTGTACACACAGACATTGTCCTCTCTTCTGTACAAAAGGAATAG 3090 0.4084 MTGIVKEEDVLRADVKSTLSSKDDNSGSSQLLRLQYQVTKLFKGFSSSPDLQNQNTNYNPEILTTLKRQWAANFHLKYMGQKSWKEPSRLFESMVVVGLHPNCDVQALHRQFVDRKLEGSDKLRSDLGCQNQSRAESNIEPQVLFVYPPEKRLPLKRKDLLSFCFPGGLEVQAVERTPSMSALNEIFFGQEHLKQMDLSFVFRLQGSDNSTLYGCCVLVEELVQKPSGLLSLISDKQPSYSSLRRYILTTQRCYCILSRLPFFELHFGVLNSIFTQERLEKLTKGVGDSNLEFVEVSYDEENSEGNSESVLVSDDIIEHRFHENSISSQSRAITSTSENIVGDDPPENLKVDGELQSYKERIDYDSDVPTEHETYRTETKEESGPTISEDSDGQPENHMVDDGELQSDKKRIDYESVVPTEHETNRTAAKEVSGPTISEDSDGQLENLMVDGDLQSCKKRINYDSVLPNEHKTERTGVEEESGPTISEDSDGQPENLMVDGDLHSYKERIDYDSVVLTENGTDRTAAKEETGPAISEDTDCHQESLMVDGELQSYKKIIDYDSVVPTEHETDRTTAKEVSGPTISEDSNGQPEILAVDGELHSYKERIDYDSVVPAEHETDRTTATEESGPINSEDSDLNGDAFTAKKELEDRNLPDAILPLVHCCQYESSESSCSFQGSPCEDRNFRSDIDDNEAEDASFSGQEKLDDLNDILDWAVENDHGPLQIICKYYQLSCLARGSALTFHPLEHLHPLEYHRPAVTVLCRTGSTIDLENFSTGLDLADAQNTLVVEEATSLSVWTIACLCGTLRLENVLTFLAGVLLEKQILVACSNLGILSAAVLSVIPLIQPYRWQSLLMTVLPNDMLEFLDAPVPFIVGIKNKNKTSEAQSKFTNVIVVDANRNQVTSPTMPQLPRQKELISSLRPYHATLVGESYLGRRRPVYDCTEMQIGAAKGFLSVLRSYLDSLCYNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKLFVDTQLFSVHTDIVLSSVQKE 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05139 1029 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 21 1021 - -
Trre15g05139 1029 MobiDBLite consensus disorder prediction 360 387 - -
Trre15g05139 1029 Pfam DENN (AEX-3) domain 793 901 IPR001194 -
Trre15g05139 1029 MobiDBLite consensus disorder prediction 360 443 - -
Trre15g05139 1029 MobiDBLite consensus disorder prediction 616 640 - -
Trre15g05139 1029 Pfam uDENN domain 141 218 IPR005113 -
Trre15g05139 1029 ProSiteProfiles Tripartite DENN domain profile. 609 1029 IPR037516 -
Trre15g05139 1029 SMART DENN_cls 249 903 IPR001194 -
Trre15g05139 1029 SMART uDENN_cls 87 220 IPR005113 -
Trre15g05139 1029 Gene3D - 797 965 IPR043153 -
Trre15g05139 1029 MobiDBLite consensus disorder prediction 394 428 - -
Trre15g05139 1029 MobiDBLite consensus disorder prediction 429 443 - -
Trre15g05139 1029 MobiDBLite consensus disorder prediction 471 496 - -
Trre15g05139 1029 MobiDBLite consensus disorder prediction 626 640 - -
Trre15g05139 1029 Gene3D - 78 286 - -
Trre15g05139 1029 MobiDBLite consensus disorder prediction 566 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05139 Trre-Chr15 61040264 61051445 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05139 - - mtr:25494181 1528.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05139 15 61040264 61051445 Trre15g05139 15 61040264 61051445 ECH
Trre15g05139 15 61040264 61051445 Trre3g02496 3 24428336 24443865 PCT