Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05076 ATGGGCACCCCTGACAAGAAGATATCTGATCTTGTTGATGTAGTTAAGTCCTGGATCCCTCGAAGGATTGAGCCACCAAATGTGTCGAGGGATTTTTGGATGCCAGATCAAAGTTGTAAGGTATGCTACGACTGTGATTCACAATTTACAGTATTCAACCGCAGGCATCACTGTCGAATCTGTGGTCGAGTTTTTTGTGCAAAATGCACTGCCAATTCTGTTCCTGCGTCTCCACATGAGGCAAATAACGGTCGTGGAGAATCGGATAGGATTAGGGTCTGTAACTATTGCTTTAAGCCATGGGAGGAGGGAGTAGCAGCTGTTGATAGTGCCACACCCTCAGCCATCCCTCATCTCAGCCCTTCACCATCTTCAACAAGCTTGGTCAGCTCTAAGTCCAGTAGCAGCAGCACTGCCGGTTCAGTTCCATATTCAACCGGGTCTTATCAGTGTGTGCCTTGTAGTCCACATCAATCTTCCCAAATGAATCCGATAACAGACGAGCAAGAAAATTTAAATTCAGGGATGAGTACTAATCCCTCTGAGGCTGTAGAGAATTTGAATTCTAACCAAAATGGCTATTGCTTCAACAGGAGTGATGATGAGGATGATGAGTATGGTGTATACCATTCTGATGCAGAATCAAGGCATTATTCTCGCGTCAATGACTATGATGATCTAGTTAACATTCAAGGGATTGACCGTGTCTATGGACCACATATAATGCATTCTGATGGAGCTAACATTCAAGAAAGAAGCTCAAGTTCCCTATCACCACCGCTGAATCTTGAGTTAGATGGTGCAGATGGAATTCAAACACCAGGAAAAGAAGCTGATGAGCATGATCCTACAGATGGATGTGAAACATCTCCCTATCAGGAGGAGGCTAATAATATGGAGCCTGTGGATTTTGAGAATAATGGGCTGCTGTGGGTACCTCCTTTGCCGGAGGATGAAGAGGATGATAAAGAAGCTGTTCTTGTTGACGATGACGATGATGATGAAGATGTAGGTAGTACTGGTGAATGGGGATATCAGCGATCCTCGACTAGCTTTGGTTCTGGAGAATTTCGCAGCAGAGATAAGTCAGGTGAGAATAACAAGAAAGCCATGAAGAATGTTGTAGAAGGACATTTTAGAGCTCTAGTAGATCAGCTTTTGCAGGTGGAAAGCCTAACTGTTGATGACGATGGCAAAGAGAGTTGGTTGGATATAATTACCTCTTTGTCTTGGGAAGCTGCAACCCTTCTGAAGCCTGATATGAGCAGGGGTGGAGGTATGGATCCTGGTGGATATGTAAAGGTTAAATGCATAGCTTGTGGGCATCGAAATGAAAGCATGGTGGTTAAAGGCATTGTTTGTAAGAAGAATGTGGCTCATCGGCGAATGACATCAAAAATTGATAAACCACGTTTTCTAATACTTGGAGGTGCTTTGGAGTATCAGCGTGTTTCTAACCAGTTATCAAGTGTTGATACATTGTTACAGCAGGAGATGGACCATTTGAAGATGGCAGTTGAGAAGATTGCTGTTCATAAACCAAATGTTCTTTTGGTTGAGAAGTCAGTTTCTCGTTATGCCCAAGAATACCTTCTCGCTAAAGACATATCTCTTGTTCTAAATATTAAAAGGCCACTTTTAGAGCGTATTGCCCGTTGTACCGGGGCACAGATTGTCCCTTCAGTTGATTATTTTACCTCTCAAAAACTGGGTTACTGTGAAACGTTTCACGTCAACAAATTTTTTGAGGAGCACGGTAGTGCTGGACAAGGTGGGAAAAAATCAACAAAGACTTTAATGTTCTTTGAGGATTGCCCCAAACCGCTGGGTTGCACTATCTTGCTCAAAGGCTCTAATGGGGATGAGTTGAAGAAGGTGAAACATGTAGTCCAATATGGAGTCTTTGCAGCCTATCATTTGGCGCTGGAAACATCTTTTCTGGCAGATGAAGGTGCTTCACCCCTAGAGCTTCCCTTGAAATCTCCCATAACCGTTGCACTGCCCGATAAACCATCTAGTATTGTAAAATCCATTTCAACTATACCTGGATTTTCTGTTGTCACCGGTAGAGGGCATCAGGGAGCTGAAACTAATAAAGAAGTACCAAAGTGTAATGATGGCTTCAAGACACTTAGAACCTCATCCAGCAGCAGTGAATCCATGGAAAGATCACTGCCAGGTGAATCAATCCACATGCACAAGATCTCTGGAGATGTCACCCAACTAGCTCAGGATATGTCATCTTCCCACTGCAATAGTTTCCTCACAAATGCTTCTTTTGAGAAGGATGGCAAAGAACGTCCGAAGGAATCTTTACATTATAGACAAGATGAGGGAACAAAGACCATGATACGCGCTGATCTTATTTCAGATTTCTTTGGCACCTTTGAGCCTTCTGGGAGAGATGGCAATAACCACATCAAAGCTGTAGCATTGGCTTCAAATCAAGGAGCTGGTCTCGAGTCACCCATTGTAAGACATGACGATGACAATAATAATAATAATTTTGATAATGATATGATACATTCAAAAGAAGATTATCCTCCCTCAACTTCCGACCATCAGAGTATTTTGGTCTTCTTATCAACACGCTGTGTGTGGAAAGGAACTGTTTGTGAAAGATCCCATCTTGTGAGAATTAAATACTATGGAAGCTCTGATAAGCCTCTGGGTCGATTTTTGCGAGATCAACTATTTGATCAGAGTTACACTTGCCGCTCATGTGAAATGCCACCAGAAGCTCATGTTCATTGTTATACTCATCGGCAAGGGAGCCTGACAATTTCTGTGAAGAACCTATCAGAGTTTCCTTTACCAGGGGAAAGGGAAGGTAAAATCTGGATGTGGCACAGGTGCCTCAAATGTCCTCGTGTAAATGGTTTTCCTCCTGCCACACGGAGAGTAGTTATGTCTGATGCTGCTTGGGGCCTATCTTTTGGGAAATTCTTGGAGCTGAGTTTCTCAAATCATGCAGCAGCAAGTAGGGTTGCAAATTGTGGTCATTCTCTCCACAGAGACTGTTTAAGATTCTATGGATTTGGGAAGATGATTGCCTGCTTTCGCTATGCTTCAATTGACCTTCATTCTGTTTATCTTCCCCCATCTAAACTAGAATTCAACTATGATAGTCAGGACTGGCTACAGAAAGAAGCAGATGAGGTACGTAACAAGGCTGAAATACTGTTTAGTGAAGTGTGCAGCGCTCTAAATCAAATTTCAAAGAGTTTTCCAGGTCCTGTGCTGCAGGAGGGTGGAAATGCAGTGACAGATTTTAAGCATCTGATTGCTGAACTTAAAGGAATGCTGCATAAAGAGAAAGAAGAATCTGAGGACTTGTTACAAAAGTTTCTGCATAAAGAGGCCAAAGCTGGCGGGCTCATGGTTGATGTTCTAGAGCTCTGTAAATTGCACCGGCATATCCTTATTCTTTCTTATGTATGGGACCAGCGCCTGATATATGCATCCAATCAAAGTAAAATTACTCTTTCAGGAGAATCAAGGCCCTCCTATCAGAAACAGAAATCGATTGGTTCTAAGGAAAAGGTTGTCGAGACAGATGTGGTCACTAGGCCTCCTGCAAGAGGCCGTAGCAGTTCTGATTTCTTTCATTTGGAAACAAAACCTGATGGAAATCTTGATTTGGAAACCACTAGCCACCTTAGCCAGTCTTGTGAAGTGGTCAAAGGTGAAGACAAGTTCGACTCTTCTCTCTCTCCTGGCGCAAATATCAATGATAAACCTAACTGTTCAGAGTTTGGAGGAGCTATACGGACGAGGAGGACTTCATCTGAGGGTGGATCTCGTAATGTGGCCAATTTATCTGATACCCTGGATGCAGCATGGACAGGTGAAACTCACTCGACAAATATACTATACAAAGAAAATGGTTGTAGAGATCCTGATGTGGAAGCCTTGACAGCTCATTCACCTACTGCAATACTTATTGCAAAATCAAATCCTGATAATAATACTGCTGATATAGGTGGGATTGAAGCAGGAGACACTCATGACTCTAAATTGCATTCCAAAGGACTTGATACTAGATGGACTGGGATGCCATTTGCTAACTCATGGTCAGTGAACAAATCTTCTGCCTTCAATGCACAGAAGCTTGTTGATTACAACTTTGTCCACATTTTATCATTTCGAGAGTTGGACCGCCAGGCTGGTGCTAGACTGCTTCTTCCTGCTGGCATTAATGATACCATAGTGCCTGTTTATGATGATGAACCCACTAGTGTTATAGCACATGCGCTTGTATCAAAAGAATATTATATCCAGATGACAGAATCTGATAGGCCTAAAGACAGTTTAGAAAGTTCAGTTTCATTGCCACTATTTGATTCGACAAGCCTACTTTCTCTCAACTCTTTGGACGAGACTATTACTAACAGCTACAGAAGTTTTGGATCGTCTGAAGAGAGCATGACATTATCCACTTCTGGGTCTCGGATGGTTGGGGATTCACTCCTGTATTCAAAGGATTTTCATGCAAGGGTTTCTTTTAATGATGACAGTTCCCTCGGAAAAGTGAAGTATACCGTAACTTGCTACTATGCAAAGAGATTTGAGGCTCTAAGAAGAACATGCTGTCCTACTGAGCTAGATTTTGTGCGGTCCCTTAGTCGTTGTAAGAAGTGGGGGGCTCAGGGAGGAAAGAGCAATGTTTTCTTTGCAAAAACCTTGGATGATAGATTTGTTGTCAAGCAGGTTACAAAGACAGAGCTTGAATCATTTTTCAAGTTTGCACCAGCTTATTTTAAATATTTATCTGAGTCAATCAGTACAGGAAGCCCAACTTGTCTAGCAAAGATCTTGGGCATTTATCAGGTAACATCAAAGCACCTCAAAGGAGGGAAGGAAACAAAAATGGATGTTTTGGTTATGGAAAATCTTCTCTATCGGCGTAACATTAGAAGGCTTTATGACCTTAAAGGTTCTTCTCGATCAAGGTACAATCCAGATACAAGTGGGAGCAATAAAGTTCTGCTTGATCAGAATCTCCTTGAAGCTATGCCAACCTCTCCAATATTTGTTGGGAACAAGGCAAAGCGGCTTCTTGAGAGGGCTGTGTGGAATGATACTGCATTCCTTGCTTCAATATATGTGATGGACTACTCATTGCTGGTTGGTGTGGATGAGGAAAAGCATGAGCTAGTTTTAGGTATCATTGATTTTATGAGGCAATATACATGGGACAAACACCTTGAAACTTGGGTGAAAACCTCAGGCATACTTGGTGGACCCAAGAATACTTCTCCAACTGTTATATCACCACAACAGTACAAAAAACGGTTCAGGAAAGCGATGAGCTTATATTTTCTTATGGTGCCAGATCAATGGTCTCCTCCTACCTTACAAACCAGTGAGTCTCAATCTGATCTTTGTGATGAAAACTCATGA 5403 0.4231 MGTPDKKISDLVDVVKSWIPRRIEPPNVSRDFWMPDQSCKVCYDCDSQFTVFNRRHHCRICGRVFCAKCTANSVPASPHEANNGRGESDRIRVCNYCFKPWEEGVAAVDSATPSAIPHLSPSPSSTSLVSSKSSSSSTAGSVPYSTGSYQCVPCSPHQSSQMNPITDEQENLNSGMSTNPSEAVENLNSNQNGYCFNRSDDEDDEYGVYHSDAESRHYSRVNDYDDLVNIQGIDRVYGPHIMHSDGANIQERSSSSLSPPLNLELDGADGIQTPGKEADEHDPTDGCETSPYQEEANNMEPVDFENNGLLWVPPLPEDEEDDKEAVLVDDDDDDEDVGSTGEWGYQRSSTSFGSGEFRSRDKSGENNKKAMKNVVEGHFRALVDQLLQVESLTVDDDGKESWLDIITSLSWEAATLLKPDMSRGGGMDPGGYVKVKCIACGHRNESMVVKGIVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVSNQLSSVDTLLQQEMDHLKMAVEKIAVHKPNVLLVEKSVSRYAQEYLLAKDISLVLNIKRPLLERIARCTGAQIVPSVDYFTSQKLGYCETFHVNKFFEEHGSAGQGGKKSTKTLMFFEDCPKPLGCTILLKGSNGDELKKVKHVVQYGVFAAYHLALETSFLADEGASPLELPLKSPITVALPDKPSSIVKSISTIPGFSVVTGRGHQGAETNKEVPKCNDGFKTLRTSSSSSESMERSLPGESIHMHKISGDVTQLAQDMSSSHCNSFLTNASFEKDGKERPKESLHYRQDEGTKTMIRADLISDFFGTFEPSGRDGNNHIKAVALASNQGAGLESPIVRHDDDNNNNNFDNDMIHSKEDYPPSTSDHQSILVFLSTRCVWKGTVCERSHLVRIKYYGSSDKPLGRFLRDQLFDQSYTCRSCEMPPEAHVHCYTHRQGSLTISVKNLSEFPLPGEREGKIWMWHRCLKCPRVNGFPPATRRVVMSDAAWGLSFGKFLELSFSNHAAASRVANCGHSLHRDCLRFYGFGKMIACFRYASIDLHSVYLPPSKLEFNYDSQDWLQKEADEVRNKAEILFSEVCSALNQISKSFPGPVLQEGGNAVTDFKHLIAELKGMLHKEKEESEDLLQKFLHKEAKAGGLMVDVLELCKLHRHILILSYVWDQRLIYASNQSKITLSGESRPSYQKQKSIGSKEKVVETDVVTRPPARGRSSSDFFHLETKPDGNLDLETTSHLSQSCEVVKGEDKFDSSLSPGANINDKPNCSEFGGAIRTRRTSSEGGSRNVANLSDTLDAAWTGETHSTNILYKENGCRDPDVEALTAHSPTAILIAKSNPDNNTADIGGIEAGDTHDSKLHSKGLDTRWTGMPFANSWSVNKSSAFNAQKLVDYNFVHILSFRELDRQAGARLLLPAGINDTIVPVYDDEPTSVIAHALVSKEYYIQMTESDRPKDSLESSVSLPLFDSTSLLSLNSLDETITNSYRSFGSSEESMTLSTSGSRMVGDSLLYSKDFHARVSFNDDSSLGKVKYTVTCYYAKRFEALRRTCCPTELDFVRSLSRCKKWGAQGGKSNVFFAKTLDDRFVVKQVTKTELESFFKFAPAYFKYLSESISTGSPTCLAKILGIYQVTSKHLKGGKETKMDVLVMENLLYRRNIRRLYDLKGSSRSRYNPDTSGSNKVLLDQNLLEAMPTSPIFVGNKAKRLLERAVWNDTAFLASIYVMDYSLLVGVDEEKHELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNTSPTVISPQQYKKRFRKAMSLYFLMVPDQWSPPTLQTSESQSDLCDENS 1800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05076 1800 SMART PIPK_2 1484 1775 IPR002498 GO:0016307|GO:0046488
Trre15g05076 1800 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1450 1774 IPR002498 GO:0016307|GO:0046488
Trre15g05076 1800 SMART fyve_4 28 103 IPR000306 GO:0046872
Trre15g05076 1800 MobiDBLite consensus disorder prediction 115 139 - -
Trre15g05076 1800 MobiDBLite consensus disorder prediction 708 723 - -
Trre15g05076 1800 MobiDBLite consensus disorder prediction 305 324 - -
Trre15g05076 1800 SUPERFAMILY FYVE/PHD zinc finger 31 104 IPR011011 -
Trre15g05076 1800 MobiDBLite consensus disorder prediction 690 723 - -
Trre15g05076 1800 CDD PIPKc_PIKfyve 1511 1774 IPR044769 GO:0000285
Trre15g05076 1800 MobiDBLite consensus disorder prediction 330 366 - -
Trre15g05076 1800 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 23 1787 - -
Trre15g05076 1800 Pfam TCP-1/cpn60 chaperonin family 384 648 IPR002423 GO:0005524
Trre15g05076 1800 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1633 1775 - -
Trre15g05076 1800 Gene3D - 1633 1775 - -
Trre15g05076 1800 MobiDBLite consensus disorder prediction 157 190 - -
Trre15g05076 1800 Coils Coil 1095 1115 - -
Trre15g05076 1800 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 1476 1631 - -
Trre15g05076 1800 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 108 IPR013083 -
Trre15g05076 1800 CDD Fab1_TCP 380 651 - -
Trre15g05076 1800 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 102 IPR017455 -
Trre15g05076 1800 Gene3D GroEL 444 617 IPR027409 -
Trre15g05076 1800 MobiDBLite consensus disorder prediction 113 139 - -
Trre15g05076 1800 MobiDBLite consensus disorder prediction 342 357 - -
Trre15g05076 1800 CDD FYVE_PIKfyve_Fab1 32 99 - -
Trre15g05076 1800 MobiDBLite consensus disorder prediction 249 293 - -
Trre15g05076 1800 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 444 617 - -
Trre15g05076 1800 MobiDBLite consensus disorder prediction 273 288 - -
Trre15g05076 1800 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1550 1716 IPR002498 GO:0016307|GO:0046488
Trre15g05076 1800 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1471 1631 IPR027484 -
Trre15g05076 1800 SUPERFAMILY SAICAR synthase-like 1508 1774 - -
Trre15g05076 1800 SUPERFAMILY GroEL apical domain-like 445 617 IPR027409 -
Trre15g05076 1800 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 24 109 - -
Trre15g05076 1800 Pfam FYVE zinc finger 33 99 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05076 Trre-Chr15 60485881 60495445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05076 1 1800 EF-hand Containing Proteins AT3G14270 55.610 0.0 1889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05076 K00921 - gmx:100779147 2772.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05076 15 60485881 60495445 Trre15g05076 15 60485881 60495445 ECH
Trre15g05076 15 60485881 60495445 Trre7g01894 7 14806087 14813040 PCT