Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04843 ATGGCTATCATAACAACTCTCACCGGAAAACGCCCTCACCGCTGGCTCTCCGTTAATCACAACAATCAATCTCCCAATTCTTCACGATTCAAAAGACTGAAAGTTTCAACCATGTCCAACAACACACAATCATCGTTATCCACCACAACCACCAATGCCGCTGTTTCTAGAATTTCCCGTTACCCTGAAACTAAACCACCTTTGCGTAGAGAGGTTCATGCTCCATGTAGTAGACCGCGGAAATTTGATTTATCGATTAATTCGAAATCAGAATCATCGAATTTGATGATTAGTGGTATTAGCAATGTGTTAATCGAAAAATACCAGCGGACGAAATATTCTGCATTAGCTACGATTACGGTACGGGCGAAGGGGAATGAACAAGATAACTATAAGGAACTTGTTTCGGAAGATTCGAATGTTGAAGATGCACGAGAGCTGCGTTCTGCGGTGAAAGACAGCAAGTTGAAGGAGAATGATTTGGTACAGAAACAGTCAACTACATCTGTGGTTTCTGAGTTGAGTGGTGGTAAATTGGATGAGTTTGATGCTGCTAAGATGTTGGATACTTTGTCTTTGAGTCCGGAGAATGATCTTTCGGGTGTTCGTGCTTACAAGAAGTTGCTTGAGGCTGTTGATAAGAGATCGGATACGATTGGTAGATTGAAGTTTGAAATTCAGCTTAATGAGAAGCGCAGATCCCCATTTGATTTGTTGCGCCCAAAGAAGGAACTAGTAGAGGAAGTGCCGTGGGAACCTTTTGTTGCTCTTACAGAAGAGGAAGAAGTTGAGGTTGCACGAGCCTTTTCTGCCAACCGGAAGAATGTCTTGGTTTCTCATGAGAAATCCAACATTGAAATATCCGGTGAAAAGTTTCAGTGTCTTAGGCCAAGTGGATGGTTAAATGATGAGGTGATAAATTTGTACCTCGAGTTGCTGAAAGAGAGGGAGAGAAGAGACCCACAGAAGTATCTGAACTGTCATTTTTTCAATACCTTTTTCTATAAGAAGTTAATAAGTGGCAAGAATGGTTATGATTACAAATCTGTGAGGAGATGGACTACTCAAAAGAAATTGGGATACGGCCTACATGAATGTGATAAAATATTTGTACCTATTCATCAGCAGGTTCATTGGTGCTTAGCTGTTATCAATAAGAAGGAAAATAAATTTCAGTACCTTGATTCACTGAAAGGAATTGATACCCAAGTGCTGAAAGTGTTGGCAAGATATTTTGTAGATGAAGTCAAGGACAAAACTGGAGAAGATATTGACATTAGTTCTTGGGAAAAAGAATTTGTTGAAGACCTTCCTGGACAGAAGAATGGGTATGATTGTGGGGTGTTTATGGTTAAATATGCTGACTTTTATAGCAGAAACTTGAGGCTGTGTTTCAACCAGGAACATATGCCTTACTTCCGGCGTAAAACTGCTAAGGAAATCTTGAGATTGAAAGCTGACTAA 1464 0.4023 MAIITTLTGKRPHRWLSVNHNNQSPNSSRFKRLKVSTMSNNTQSSLSTTTTNAAVSRISRYPETKPPLRREVHAPCSRPRKFDLSINSKSESSNLMISGISNVLIEKYQRTKYSALATITVRAKGNEQDNYKELVSEDSNVEDARELRSAVKDSKLKENDLVQKQSTTSVVSELSGGKLDEFDAAKMLDTLSLSPENDLSGVRAYKKLLEAVDKRSDTIGRLKFEIQLNEKRRSPFDLLRPKKELVEEVPWEPFVALTEEEEVEVARAFSANRKNVLVSHEKSNIEISGEKFQCLRPSGWLNDEVINLYLELLKERERRDPQKYLNCHFFNTFFYKKLISGKNGYDYKSVRRWTTQKKLGYGLHECDKIFVPIHQQVHWCLAVINKKENKFQYLDSLKGIDTQVLKVLARYFVDEVKDKTGEDIDISSWEKEFVEDLPGQKNGYDCGVFMVKYADFYSRNLRLCFNQEHMPYFRRKTAKEILRLKAD 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04843 487 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 79 480 - -
Trre15g04843 487 Gene3D Adenoviral Proteinase; Chain A 245 485 - -
Trre15g04843 487 FunFam Ubiquitin-like-specific protease ESD4 244 485 - -
Trre15g04843 487 SUPERFAMILY Cysteine proteinases 253 485 IPR038765 -
Trre15g04843 487 ProSiteProfiles Ubiquitin-like protease family profile. 285 457 IPR003653 GO:0006508|GO:0008234
Trre15g04843 487 Pfam Ulp1 protease family, C-terminal catalytic domain 300 481 IPR003653 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04843 Trre-Chr15 58656158 58661852 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04843 K08592 - gmx:100797013 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04843 15 58656158 58661852 Trre15g04843 15 58656158 58661852 ECH
Trre15g04843 15 58656158 58661852 Trre3g01719 3 13978065 13985858 PCT