Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04830 ATGGATGCTACCTCACAACCATTGAAGTATCAGACATGGTTCTTGAAAGTTTCTATCCACTGTGAAGGTTGTAAGAGAAAAGTAAAGAAAGTTCTTCAAAGCATTGAAGGGGTTTTTACTACAACAATAGATCCACAGCAGCAAAAAGTAACTGTCACCGGAAATGTTGCGGTTGAGACTCTGATAAGGAAGCTGGCCAAAGCTGGAAAACATGCCGAGGTTTTGCCGGAGAATCTTCCTGGGAAAGGAAAGGATTCCAACAAAGCTAAGAACAATAAGAAGAGTGAACAAAAAAACCAAGAAACTCAGCAAAAGCAGCAAAACCACTCTTCTGCAAATAGTACTGAATCTAACCATAGTTCTGTCAAAAAAAGAGGAACTGAAAATGCTGAAAAATGCAAAGGTGAAAACAATAGTAGCAACACAAAAACTAAGAAGTTGCCGGAGAAGTCTCCGGCAGGTGGTAAGGGACCGGAGGCAGAAAACAAAGGTGTTCAAACTGGTGGAGGAGATTCTGGTAAGAAGAAGATGAAGAAAGTTCAGAATGGTGGTGGAACTGGAACAGGAACAGGAAACAATGGGTTGAGTTCAGCATCTACTGGTGCACAAGCACACACAGGATCAGAATTTCAGTATCCAGGTCAGGTTGTGGGACAAGTGAATCTGAGCCCTACACGTCAGCAACCGTACATGTTTTATCCAGAAACATGTTATCCTCCTTTGGTACAGTATGCAACTTACAACAGATTATGTCCCATTGGAACAATGGCTTGTCCTTCTTACTATGTTCCACCATTACCCTACATGTGTTCAGGCCTTGACCGTGACCCTTATCATCAGTTCCAATCTACACCTTTGATTCCCTTTGAGTTCTTCAGTGATGAAAATGCAAATGGATGTTCTATTATGTAA 912 0.4156 MDATSQPLKYQTWFLKVSIHCEGCKRKVKKVLQSIEGVFTTTIDPQQQKVTVTGNVAVETLIRKLAKAGKHAEVLPENLPGKGKDSNKAKNNKKSEQKNQETQQKQQNHSSANSTESNHSSVKKRGTENAEKCKGENNSSNTKTKKLPEKSPAGGKGPEAENKGVQTGGGDSGKKKMKKVQNGGGTGTGTGNNGLSSASTGAQAHTGSEFQYPGQVVGQVNLSPTRQQPYMFYPETCYPPLVQYATYNRLCPIGTMACPSYYVPPLPYMCSGLDRDPYHQFQSTPLIPFEFFSDENANGCSIM 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04830 303 ProSiteProfiles Heavy-metal-associated domain profile. 10 73 IPR006121 GO:0046872
Trre15g04830 303 SUPERFAMILY HMA, heavy metal-associated domain 9 75 IPR036163 GO:0046872
Trre15g04830 303 Gene3D - 9 74 - -
Trre15g04830 303 FunFam Copper transport protein ATOX1 9 77 - -
Trre15g04830 303 MobiDBLite consensus disorder prediction 183 206 - -
Trre15g04830 303 MobiDBLite consensus disorder prediction 101 120 - -
Trre15g04830 303 Pfam Heavy-metal-associated domain 17 71 IPR006121 GO:0046872
Trre15g04830 303 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 4 303 - -
Trre15g04830 303 MobiDBLite consensus disorder prediction 133 147 - -
Trre15g04830 303 CDD HMA 15 73 IPR006121 GO:0046872
Trre15g04830 303 MobiDBLite consensus disorder prediction 83 100 - -
Trre15g04830 303 MobiDBLite consensus disorder prediction 67 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04830 Trre-Chr15 58567437 58568919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04830 - - tpra:123882121 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04830 15 58567437 58568919 Trre3g01737 3 14120650 14122014 PCT