Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04453 ATGTCCATAAACTTACAGTTTCATGCCTTCGCCGGCAACCCTCTAAACTCAATTCCTGGCAACCCTCTTTCACCCTCTGCAGCTCTCGAATCCCTCAATGCCAGAATTCTAGGAAACGACCACTCTTCTCCATCCCCGAATTTCAAGGTGCTTCCTTTCAGAAATGGAAGGCCTTTAGTCTCTTCCACGGCCGGTTCCGGAGAATCGCTGCCAATTTGGCATCTGGGTTGGGTTGGTTTGGATGATCTTAGGGGTATCTTCGAAAATTCAGGTGCCCAGTTGAAAGGAGACTCGTTGGTTTACTTGGGTTCGAGTGGAGACGACGATGCCCTTTACTGGGCAATTGATGTTTCTTATAAGGTACCTGAACTGGGTACCAACATGGAGATGGAGTTGCGTTTCGTGGAGCTCCGGACGCTCATGGTGGCCACCGATTGGGAGAACTTAAAAGCAATGGAAAATTTGGCTATCGCTGGTAATGCGAAAGCACTGCTAGAATGGCATAATAATTCACAATTTTGTGGACATTGTGGAGAGAAAACTGTCCCAAAAGAAGCTGGGAGACGGAAGCAATGTTCGAATGATTCTTGCAAAAAAAGGATATATCCACGTGTTGATCCGGTGGTAATTATGCTTGTAATCGATAGAGAGAATGACCGTGTCCTCTTGGGCACACGACCAAAGTTTATTTCTCAATTGTGGAGCTGCTTATCAGGTTTCATAGAGCCAGGAGAAAGCTTGGATGAAGCTGTAAGAAGAGAAACTTGGGAAGAGTCTGGTATTGAAGTGGGCGAAGTTGTATATCACAGTTCCCAGCCATGGCCCGTTGGACCAAATAGCATTCCATGCCAGCTGATGGTTGGGTTCTTTGCATATGCAAAATCGCGTGAAATAACTGTCGACAAGAAAGAGTTAGAAGATGCTCGGTGGTTCAGTAGAGAAGATGTACGAGAAGCATTAACGTTGGCTGAATACAAAAAAGCCCAAAAAACAGCAGCGTCAAAGGTAGAACAAATCTGTAAGGGAGTAGAAAAGAGTAGGAGCATGGCTGCTGATTTCAACGTCGAAAGCGGTGAACTTGCTCCAATATTTGTTCCCGGACCTTTTGCAATAGCCCATCACCTTATTTCCTCTTGGGCCTTCTCAGATCAAAATGTACATTAA 1164 0.4545 MSINLQFHAFAGNPLNSIPGNPLSPSAALESLNARILGNDHSSPSPNFKVLPFRNGRPLVSSTAGSGESLPIWHLGWVGLDDLRGIFENSGAQLKGDSLVYLGSSGDDDALYWAIDVSYKVPELGTNMEMELRFVELRTLMVATDWENLKAMENLAIAGNAKALLEWHNNSQFCGHCGEKTVPKEAGRRKQCSNDSCKKRIYPRVDPVVIMLVIDRENDRVLLGTRPKFISQLWSCLSGFIEPGESLDEAVRRETWEESGIEVGEVVYHSSQPWPVGPNSIPCQLMVGFFAYAKSREITVDKKELEDARWFSREDVREALTLAEYKKAQKTAASKVEQICKGVEKSRSMAADFNVESGELAPIFVPGPFAIAHHLISSWAFSDQNVH 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04453 387 Gene3D - 43 203 - -
Trre15g04453 387 FunFam Nudix hydrolase 19, chloroplastic 204 383 - -
Trre15g04453 387 ProSitePatterns Nudix box signature. 239 260 IPR020084 GO:0016787
Trre15g04453 387 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 204 348 - -
Trre15g04453 387 Pfam NUDIX domain 208 321 IPR000086 -
Trre15g04453 387 CDD NADH_pyrophosphatase 207 380 - -
Trre15g04453 387 Pfam NADH pyrophosphatase zinc ribbon domain 170 201 IPR015376 GO:0016787|GO:0046872
Trre15g04453 387 SUPERFAMILY Nudix 154 328 IPR015797 -
Trre15g04453 387 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 50 167 IPR015375 GO:0016787
Trre15g04453 387 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 19 384 - -
Trre15g04453 387 ProSiteProfiles Nudix hydrolase domain profile. 203 333 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04453 Trre-Chr15 55285019 55287353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04453 K03426 - gmx:100793335 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04453 15 55285019 55287353 Trre15g04453 15 55285019 55287353 ECH
Trre15g04453 15 55285019 55287353 Trre11g02422 11 28842186 28847743 PCT