Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02422 ATGTCCATAAACACCCACGCCTTCGCCGGAAACCCACTAAGATCCAAAACACCAAACAATAACGACCTGTTTTCACCAACAACTGCACTCGAAACTCTCAAATCGCGAATCACCGACAACACTCACCACAAATCTCCTAATTTCAAGATACTTCCATTCAGAAACGGGAAGCCCCTCGCGACTTCAATTGGAGGTGAGTCATGGCAGCTCGGTTGGATCGGTCTAGGCGAACTCGGTAGCGTATTGAGTCCTGAATTGAGCGGTGACTCGTTTGTTTATCTTGGTTCGGATGATGACCAAGATGCGGTTTACTGGACGATTGATGTGTCTGGAGAGAGTGGGTTTGTTCCTGAATTTGGTGGTGTGCGGTTTAGCTTTGTAGAGCTTAGAACGCTTATGGTTGCCACTAATTGGGTTGATTCCAAATCTATGGGAAACTTGGCTATTGCTGGTCATGCCAGAGCACTGTTAGAATGGCACAAGATATCACTTTTTTGTGGACATTGTGGAGAGAAAACAGTCCCAATGGAAGCTGGGAGACGGAAGCAGTGTTCAAATGAATCATGCAAAAAGAGGATATATCCACGAGTTGATCCGGTGGTCATTATGCTGGTAATTGATCAAGAGAATGATCGTGCCCTTTTGAGCAAACAATCTAGATTTGTGCCTAGAATGTGGAGCTGCTTAGCAGGTTTTATAGAGCCAGGGGAAAGCTTGGAGGAGGCTGTGAGAAGAGAAACATGGGAGGAGACTGGTATTGAAGTTGGAGAAGTTGTATATCACAGTTCTCAGCCATGGCCTGTTGGACCGAACAGCATGCCATGTCAGCTGATGGTTGGATTCTTTGCATATGCTAAATCCCTTGAAATTAAAGTCGACAAGGAGGAGTTGGAAGATGCTCAGTGGCACAGTAGAGAAGAAGTAAGAAAAGCTCTGACATTTGCCGAGTACACGAAAGCTCAAACAACTGCAGCAGCAAAGGTAGAACAAATGTGTAAAGGAGTAGAAAAAACTCACAGCTTGTCAACAGATTTCAATGTGGAAAGTGGTGAACTTGCACCAATGTTTGTTCCTGGCCCCTTTGCAATAGCCCATCACCTGATTTCCTCTTGGGCATTCCCGGATAAAAATATTAACGGCAGCGAATTACATTCAAAACAACCAATTGGTTCCGCGTCAAATTTGTAG 1188 0.4487 MSINTHAFAGNPLRSKTPNNNDLFSPTTALETLKSRITDNTHHKSPNFKILPFRNGKPLATSIGGESWQLGWIGLGELGSVLSPELSGDSFVYLGSDDDQDAVYWTIDVSGESGFVPEFGGVRFSFVELRTLMVATNWVDSKSMGNLAIAGHARALLEWHKISLFCGHCGEKTVPMEAGRRKQCSNESCKKRIYPRVDPVVIMLVIDQENDRALLSKQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVGPNSMPCQLMVGFFAYAKSLEIKVDKEELEDAQWHSREEVRKALTFAEYTKAQTTAAAKVEQMCKGVEKTHSLSTDFNVESGELAPMFVPGPFAIAHHLISSWAFPDKNINGSELHSKQPIGSASNL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02422 395 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 50 159 IPR015375 GO:0016787
Trre11g02422 395 Pfam NADH pyrophosphatase zinc ribbon domain 164 194 IPR015376 GO:0016787|GO:0046872
Trre11g02422 395 CDD NADH_pyrophosphatase 199 372 - -
Trre11g02422 395 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 196 340 - -
Trre11g02422 395 ProSiteProfiles Nudix hydrolase domain profile. 195 325 IPR000086 -
Trre11g02422 395 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 20 373 - -
Trre11g02422 395 FunFam Nudix hydrolase 19, chloroplastic 196 375 - -
Trre11g02422 395 Gene3D - 32 195 - -
Trre11g02422 395 SUPERFAMILY Nudix 147 325 IPR015797 -
Trre11g02422 395 Pfam NUDIX domain 200 312 IPR000086 -
Trre11g02422 395 PRINTS NUDIX hydrolase family signature 226 240 IPR020476 -
Trre11g02422 395 PRINTS NUDIX hydrolase family signature 240 255 IPR020476 -
Trre11g02422 395 MobiDBLite consensus disorder prediction 1 25 - -
Trre11g02422 395 ProSitePatterns Nudix box signature. 231 252 IPR020084 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02422 Trre-Chr11 28842186 28847743 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02422 K03426 - gmx:100780473 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04453 15 55285019 55287353 Trre11g02422 11 28842186 28847743 PCT