Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04451 ATGAGCTGGTCTGGAGGAGATTGGATGTGCGGTGCTTGCGAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAAAATTGTGGTTACCCCAAGTATGGAGGCCCTGACCCATCAACCTATAGATATGGCAGGACTGAAACATTGGCAGGGGACTGGTTTTGCACCGCTATGAACTGTGGAGCTCACAACTATGCAAGCCGATCAAACTGCTATAGATGCGGTGCATTTAAACATGATTATTCTTCGGGATATGGGGGTAACATGGCGAGTTCTGGAGGATATGGATCTGATTGCAGTTCTCCCCCCGGATGGAAAAGTGGAGACTGGATTTGCCCTAGAATTGGCTGCGGAATGCATAATTACGCTAGCAGGACAGAGTGCTACAAATGCAAAATGCCAAGGGATTATGGTGGTGCAGACTAA 423 0.4775 MSWSGGDWMCGACEHINFKKREACQNCGYPKYGGPDPSTYRYGRTETLAGDWFCTAMNCGAHNYASRSNCYRCGAFKHDYSSGYGGNMASSGGYGSDCSSPPGWKSGDWICPRIGCGMHNYASRTECYKCKMPRDYGGAD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04451 140 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Trre15g04451 140 PANTHER ZINC FINGER PROTEIN 45 136 - -
Trre15g04451 140 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Trre15g04451 140 Pfam Zn-finger in Ran binding protein and others 105 133 IPR001876 -
Trre15g04451 140 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Trre15g04451 140 Pfam Zn-finger in Ran binding protein and others 49 75 IPR001876 -
Trre15g04451 140 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Trre15g04451 140 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Trre15g04451 140 SUPERFAMILY Ran binding protein zinc finger-like 45 79 IPR036443 -
Trre15g04451 140 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Trre15g04451 140 Gene3D - 1 35 - -
Trre15g04451 140 Gene3D - 100 136 - -
Trre15g04451 140 Gene3D - 44 79 - -
Trre15g04451 140 SMART zf_4 107 133 IPR001876 -
Trre15g04451 140 SMART zf_4 6 30 IPR001876 -
Trre15g04451 140 SMART zf_4 50 76 IPR001876 -
Trre15g04451 140 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
Trre15g04451 140 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Trre15g04451 140 SUPERFAMILY Ran binding protein zinc finger-like 100 136 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04451 Trre-Chr15 55270336 55271494 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04451 - - gmx:100792208 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04451 15 55270336 55271494 Trre11g02426 11 28873591 28874806 PCT