Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02426 ATGAGCTGGTCAGGAGGAGATTGGATGTGTAATGCTTGTCAGCACATAAATTTCAAGAAGAGGGATGCATGCCAAAATTGTGGATACCCTAAGATTGGAGGCCCTGATCCAGATACTTATAGATATAACTGGACTGAAAAATTGGCAGGGGATTGGTATTGCAGTGGTATGAACTGTGGAGCTCACAACTATGCTAGCAGAACAAGCTGTTACAGATGTGGTGCATTGAAAAATGGTTACTCATGTGGATTTGGAGGGAACATGGATGCTTCTGGAGGATATGGATCTGATTGCAATTACCCTCCTGGATGGAAAACTGGTGACTGGATTTGCACTAGATATGGCTGTGGAGTGCACAATTATGCTAGCAGAGCTGAATGCTTCAAGTGCAAAACACCCAAAAGTTTTGGTGGTTCAGATTGA 423 0.4326 MSWSGGDWMCNACQHINFKKRDACQNCGYPKIGGPDPDTYRYNWTEKLAGDWYCSGMNCGAHNYASRTSCYRCGALKNGYSCGFGGNMDASGGYGSDCNYPPGWKTGDWICTRYGCGVHNYASRAECFKCKTPKSFGGSD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02426 140 Gene3D - 45 79 - -
Trre11g02426 140 Gene3D - 1 35 - -
Trre11g02426 140 Gene3D - 98 136 - -
Trre11g02426 140 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Trre11g02426 140 PANTHER ZINC FINGER PROTEIN 49 135 - -
Trre11g02426 140 SMART zf_4 6 30 IPR001876 -
Trre11g02426 140 SMART zf_4 50 76 IPR001876 -
Trre11g02426 140 SMART zf_4 107 133 IPR001876 -
Trre11g02426 140 SUPERFAMILY Ran binding protein zinc finger-like 3 33 IPR036443 -
Trre11g02426 140 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Trre11g02426 140 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Trre11g02426 140 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Trre11g02426 140 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Trre11g02426 140 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Trre11g02426 140 SUPERFAMILY Ran binding protein zinc finger-like 101 136 IPR036443 -
Trre11g02426 140 SUPERFAMILY Ran binding protein zinc finger-like 49 79 IPR036443 -
Trre11g02426 140 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Trre11g02426 140 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02426 Trre-Chr11 28873591 28874806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02426 - - gmx:100792208 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04451 15 55270336 55271494 Trre11g02426 11 28873591 28874806 PCT