Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04425 ATGGGAGTAGAGAGTGCTTCTTCTAGCTCAAATTCGTGGTCACAGTATGATGAAGATGATAATAGTAGCAAAAACAATAGCAGTGTTGTGGTTTTGAATGTCTATGATCTTACTCCGATTAATAATTATATGTATTGGTTTGGATTTGGGATCTTTCACTCTGGCATTGAAGTGTATGGTAAGGAATATGGATTTGGAGCACATGACTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAAGAATTGCCCTGGATTCATATATAGATGTTCCATCAATTTGGGCCAAATAAATATAAGCCCTACCGAATTCCGGACATTTATCGAAAACATGGCTTCAGAGTATCATGGCGACACATATCACCTTATATCTAAGAACTGCAATCATTTTACAGATGATGTCTCATTAAGATTGATTGGAAAACATGTCCCGGGTTGGGTGAATCGGCTTGCTAAGCTAGGTGCTTTGTGTAGCTGTCTACTGCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCCGAATACCATGAATGCTCAGAAGATGAATTTGCCGACTCTCTCTCAACTGCCACACCACACGGATCACCAGAAATAGACAACGAGCAAGAAAAACATCTTCTGTCACCATCAGCTCGTGTCGAGGATGTTACTTTCGTCAAAGAAGCCCACACAAATTGA 681 0.4053 MGVESASSSSNSWSQYDEDDNSSKNNSSVVVLNVYDLTPINNYMYWFGFGIFHSGIEVYGKEYGFGAHDFPASGVFEVEPKNCPGFIYRCSINLGQINISPTEFRTFIENMASEYHGDTYHLISKNCNHFTDDVSLRLIGKHVPGWVNRLAKLGALCSCLLPESLQVTSVKQLPEYHECSEDEFADSLSTATPHGSPEIDNEQEKHLLSPSARVEDVTFVKEAHTN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04425 226 Gene3D PPPDE domains 23 179 IPR042266 -
Trre15g04425 226 ProSiteProfiles PPPDE domain profile. 28 165 IPR008580 GO:0008233
Trre15g04425 226 MobiDBLite consensus disorder prediction 187 207 - -
Trre15g04425 226 SMART DUF862_2a 28 166 IPR008580 GO:0008233
Trre15g04425 226 PANTHER DESUMOYLATING ISOPEPTIDASE 27 206 IPR008580 GO:0008233
Trre15g04425 226 MobiDBLite consensus disorder prediction 1 25 - -
Trre15g04425 226 Pfam PPPDE putative peptidase domain 30 162 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04425 Trre-Chr15 54982134 54984983 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04425 - K22763 gmx:100778961 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04425 15 54982134 54984983 Trre15g04425 15 54982134 54984983 ECH
Trre15g04425 15 54982134 54984983 Trre11g02427 11 28879128 28881390 PCT