Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02427 ATGGGGACGAAAAGCAACACCAATTATTCATTCCAATCTGAAAAAGACAATGCAAATAACAAAACCAACAACAACAACACCAATGTTGTGTTGAATGTTTATGATCTTACACCTCTCAATAATTACTTTTATTGGTTTGGATTTGGAATCTTTCACTCCGGCATTCAAGTACATAATAAGGAATATGGATTTGGAGCTCATGATTTCCCATCCAGTGGAGTATTTGAAGTGGAGCCAAGGAAGTGCCCTGGATTTGTATACAGAACTTCTGTCAATTTGGGTGAAGTAAACATGCATCCTTCCGAGTTTCGGACATTTATTGAAAATATGGCTAGTGAGTATCATGGAGATACCTATCACCTTATATCTAAGAACTGCAATCATTTCACCGATGATGTCTCGTGTAGATTGACTGGAAAACGGGTCCCAGGTTGGGTGAATCGACTTGCTAGATTAGGTTCTTTATGTAGCTGTCTACTTCCTGATAGTATTCAAGTAACTACCGTTAAACAGCTACCTGAATACCATTCAGAAGATGAAGTTACCGATTCACTTTCAACCGCAACGCCTTGTGAATCAATGGAATTAGACGATGACCAAGCAAAATCGCTTTTGTCACCTCTTGCTAGCACAGAAGATGTTTCTTTTGTTAAAGAAACTCCAGTAAAATATTTGCATAGTGTTTGA 687 0.3814 MGTKSNTNYSFQSEKDNANNKTNNNNTNVVLNVYDLTPLNNYFYWFGFGIFHSGIQVHNKEYGFGAHDFPSSGVFEVEPRKCPGFVYRTSVNLGEVNMHPSEFRTFIENMASEYHGDTYHLISKNCNHFTDDVSCRLTGKRVPGWVNRLARLGSLCSCLLPDSIQVTTVKQLPEYHSEDEVTDSLSTATPCESMELDDDQAKSLLSPLASTEDVSFVKETPVKYLHSV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02427 228 ProSiteProfiles PPPDE domain profile. 27 164 IPR008580 GO:0008233
Trre11g02427 228 SMART DUF862_2a 27 165 IPR008580 GO:0008233
Trre11g02427 228 Gene3D PPPDE domains 21 178 IPR042266 -
Trre11g02427 228 PANTHER DESUMOYLATING ISOPEPTIDASE 25 192 IPR008580 GO:0008233
Trre11g02427 228 MobiDBLite consensus disorder prediction 1 24 - -
Trre11g02427 228 Pfam PPPDE putative peptidase domain 28 162 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02427 Trre-Chr11 28879128 28881390 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02427 K22763 - gmx:100810582 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02427 11 28879128 28881390 Trre11g02427 11 28879128 28881390 ECH
Trre15g04425 15 54982134 54984983 Trre11g02427 11 28879128 28881390 PCT