Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04336 ATGTCACTCACCCGCACCGCAATTCACCGCTTCCGTTACATCTACCGCACAATATCACCACCACCTTCATCTTCTATTACCGATCGCTTTCAATTTCAACGCTCTCTCTCTCATCCCATTCCAAAACCCTTCCAATTTCACTCCTCTTCTTTCTCCTCCTCCTCCTCCTCCCTTAAAAGCAGCGATGACGTTTATCCCACCGGTGACTTCAATTTTGTGCCCGTCACCGGCTTCAATAAATTCACCGTCAAGCTCAAGACGCTAATAGCTTTACCATGGGAGCGTATTCAACACGGCAGCATCTTGAAAATCATTTTGCGCGGCCAGATAACAGATCAGATGAATAGTAGATTCTCACGAGTATTATCTCTGCCCCAAATCTGCGATAATTTCTTGAAAGCAACTTATGATCCTCGCATTTCCGGTGTATATCTTCATATTGATATTTTAAATTGCGGTTGGGCTAAACTTGACGAAATTCGAAGACAAATCTTAAATTTCAGAAAATCAGGAAAATTTGTTGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAATATTACATTGCTTGTGCATGTGAAGAAATATATGCCCCTCCGAGTGCTTATTTTTCTTTGTTTGGATTGACCGTTCAAGCAGGATTTGTCAGAGGTGTGTTAGACAATCTTGGAATTGAACCACAAGTTGAGAAATTTGGCAAATATAAAAGTGCAGGAGAACAACTAACCCATAAAACCATGTCTGAAGATAATCGCGAGATGCTGACTACATTACTGGATAATATCTATTCAAATTGGCTAGACAAAGTCTCTTCTGCTAGAGGAAAGAAAAGAGAAGACATTGAGAACTTCATAAATGAAGGTGTCTATCAAGTTGACAGACTGAAAGAAGAGGGTTTCATATCAAGCATACTCTATGATGACGAGGTTATGACTAGGTTGAAGGAGAGACTTCAGGTGAACACCGACAAAAATCTGCCTATAGTTGATTTCAGAAAATACTCTGGAGTTAGAAAATGGACTGTTGGAATATCAGGTGGTAAAGACTTGATAGCCGTCATCCGAGCCTCAGGGATCATCCGTCGTGTTGAGAGTCCATTAAGTGCCCCCAGCAAAGGTATCATCGGAGAGAAGTTCATTGAGAAGATTCGTAGGGTCAGAGAATCAAAGAAATTCAAGGCTGCTATTATCCGAATTGATAGTCCAGGGGGTGATGCTCTTGCTTCTGATTTAATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCTGTCATTGCTTCAATGTCTGATTTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTATTACCTTAACTGGTTCAATTGGAGTTGTCGCAGGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGTTTCAACAAAGAAATTATATCAAGGGGTAAATATGCTGAGCTCCTTGCAGCTGAACAGCGTTCTTTTAGGCCACATGAAGCTGAGCTATTTGCCAAGTCTGCACAGAATATTTATAAACAATTTCGAGATAAGGCGGCTTTTTCCAGATCAATGACCGTAGACAAAATGGAAGAGGTCGCACAAGGAAGGGTTTGGACTGGTAAGGATGCAACATCGCATGGTTTGGTTGATGCTATCGGTGGGTTATCTCGTGCTATTGCTATAGCAAAATTGAAGGCCAATATACCTCAAGACAGACAGGTTACTGTTGTGGAGCTCTCAAGACCTAGTCCTTCTCTACCTGAGATTTTAAGAGGTCTAGGTAATTCTCTTGTTGGAGTGGACCAAACACTTAAGGAATTACTACATGACTTGACATTTTCAGATGGAGTTCAAGCACGGATGGATGGAATCATGTTTCAGAAACTGGAAGGATATCCATCTGCCAACCCCATTTTGACATTGATGAAAGATTACCTCAGTTCTATGTAG 1953 0.4142 MSLTRTAIHRFRYIYRTISPPPSSSITDRFQFQRSLSHPIPKPFQFHSSSFSSSSSSLKSSDDVYPTGDFNFVPVTGFNKFTVKLKTLIALPWERIQHGSILKIILRGQITDQMNSRFSRVLSLPQICDNFLKATYDPRISGVYLHIDILNCGWAKLDEIRRQILNFRKSGKFVVAYVPSCREKEYYIACACEEIYAPPSAYFSLFGLTVQAGFVRGVLDNLGIEPQVEKFGKYKSAGEQLTHKTMSEDNREMLTTLLDNIYSNWLDKVSSARGKKREDIENFINEGVYQVDRLKEEGFISSILYDDEVMTRLKERLQVNTDKNLPIVDFRKYSGVRKWTVGISGGKDLIAVIRASGIIRRVESPLSAPSKGIIGEKFIEKIRRVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDLAASGGYYMAMGAGVIVAESITLTGSIGVVAGKFNLGKLYEKIGFNKEIISRGKYAELLAAEQRSFRPHEAELFAKSAQNIYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDATSHGLVDAIGGLSRAIAIAKLKANIPQDRQVTVVELSRPSPSLPEILRGLGNSLVGVDQTLKELLHDLTFSDGVQARMDGIMFQKLEGYPSANPILTLMKDYLSSM 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04336 650 SUPERFAMILY ClpP/crotonase 344 555 IPR029045 -
Trre15g04336 650 PANTHER PROTEASE 4 49 649 - -
Trre15g04336 650 CDD S49_SppA_67K_type 102 315 IPR047217 -
Trre15g04336 650 Gene3D - 211 274 - -
Trre15g04336 650 Gene3D - 345 492 - -
Trre15g04336 650 Pfam Peptidase family S49 167 319 IPR002142 GO:0006508|GO:0008233
Trre15g04336 650 Pfam Peptidase family S49 418 568 IPR002142 GO:0006508|GO:0008233
Trre15g04336 650 CDD S49_Sppa_N_C 350 564 IPR047272 -
Trre15g04336 650 PIRSF Protease_4_SppA 45 650 IPR004634 GO:0006465|GO:0008233|GO:0016020
Trre15g04336 650 Gene3D - 493 619 - -
Trre15g04336 650 Gene3D - 94 210 - -
Trre15g04336 650 NCBIfam signal peptide peptidase SppA 350 563 IPR004635 GO:0006508|GO:0008233
Trre15g04336 650 SUPERFAMILY ClpP/crotonase 97 305 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04336 Trre-Chr15 53976550 53983261 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04336 K04773 - gmx:100809623 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04336 15 53976550 53983261 Trre15g04336 15 53976550 53983261 ECH
Trre15g04336 15 53976550 53983261 Trre11g02355 11 28140997 28150794 PCT