Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02355 ATGTCGACGCTACTTCTACCCACACCTCCTTACCTCAACTCAATTTACCAACGCAATACATTATCATCACCGTTATCATCGTCTTCTTCTTCTACTTCCTCACTTCAATTTCACCCTCGATTCTCTTTTTCATCTTTTCATTCTCTTCCCCAAACTCGTACAAGAAGATGCATTTCCCTTACCGCTTTCGATTCTTCTTCCAACTCCAAAATTGAAGAAAAAGAAGAAAGTGTTATTGACGGTGAAAAAGTTAGAATCGCTGATGAGGATTATCCTAGTGGTGACTTCGAATTTGAACCTATTATTGGATGGAGGAAATTTCTTGTTCAGGTTAAGATGTTGTTTGCGTTTCCATGGGAACGTGTTCGTAAAGGCAGTGTTCTTACAATGAAGCTTCGTGGCGAGATATCTGATCAAGTGAAGAGTAAGTTCTCTTTGGGGCTTTCTCTACCACAGCTTTGCGAGAATTTTTTGAAAGCAGCCTACGATCCTCGCATTTCTGGGATCTATCTCCATATTGATGGTTTAAACTGTGGGTGGGGTAAAGTGGAAGAAATTCGAAGGCACATATTAAATTTCAAAAAATCAGGGAAATTTGTTGTGGCTTATGTTCCTGCATTTCAAGAAAAAGAATATTACCTTGCGTGTGCATGTGAAGAGATATATGCCCCTCCTTGTGCTTACTTTACTTTGAACGGATTTAGTGTTCAAGGCTCATTCCTTAGAGGTGTTTTAGATAAAATAGGAGTTGAACCGCAGGTAGAAAGGATTGGGAAGTACAAAAGTGCTGGAGATCAATTAGCTCGAACGACCATGTCTGATGAAAACTGTGAGATGTTGACTGCTTTGCTTGATACCATCTATACAAACTGGCTTGATAAAGTTTCTTCTGCCAAAGGAAAGGGTAGAGAAGATATTCAGAACTTCATAAATGAAGGTGTTTATGAAGTTGATCGGCTGAAAGAAGAGGGCTTTATATCAAATATAATATATGATGACGAGGTTACTGCCATGCTGAAGGAGAGACTTGGAGTGAAAGCCGAAAAAAAACTACCTACGGTAGATTACAGGAAATACTCTCGTGTTAGGAAATGGACAGTTGGAATATCAGGTGGCAAAGAATGCATAGCTATCATCCGGGCCTCAGGGAACATTAGTCGAGTTAAGAGTCAATTAAGTTTTTCTAGCTCAGGAATCGTTGCAGAGGAGTTCATTGAGCAGATTCGCACTGTGAGAGAGTCAGAAGAATTTAAGGCCGCTATTATCAGAATTGACAGTCCTGGAGGTGACGCTCTTGCCTCTGATTTGATGTGGAGGGAAATTCGGCTTTTAGCTGCTTCAAAACCAGTTATTGCTTCAATGTCTGATGTGGCTGCAAGTGGAGGATACTACATGGCAATGGCAACTGATGCTATTGTTGCCGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAGTTTAACCTGGGGAAACTGTATGAGAAAATTGGCTTCAATAAAGAAATCATATCAAGAGGAAAATATGCTGAGCTCATAGCTGCTGACCAGCGTTCTTTTAGACCAGATGAAGCAGAGCTATTTGCAAAATCTGCACAGAATGCTTATAAAGGATTTCGAGACAAGGCAGCTTTATCCAGATCAATGACCGTGGAAAAGATGGAGGAGGTAGCACAGGGGAGGGTTTGGACCGGTAAAGATGCAGCATCACATGGTTTGGTTGATGCTATTGGTGGTCTTTCTCGAGCTATTGCCATAGCGAAATTGAAGGCCAACATTCCTCAAGACCAGAAGGTTACTGTTGTGGAGATATCCAAATCAAGTTCCTCTGTACCTGAAATTTTATTTGGTGGATTAAATTCCCTAACTGGAGTCATAAACGCGTTGAAGATGCTGCTACAGGAGTTGACATTTTCTGGTGGAGTTCAAACTAGGATGGATGGAAAGATATTTCGTTCATTGGAAGGATATCCTAACGCCAACTCCATTTTGTCAATTATAAAAGACTATATTAGTTCCCTGTAG 2031 0.4072 MSTLLLPTPPYLNSIYQRNTLSSPLSSSSSSTSSLQFHPRFSFSSFHSLPQTRTRRCISLTAFDSSSNSKIEEKEESVIDGEKVRIADEDYPSGDFEFEPIIGWRKFLVQVKMLFAFPWERVRKGSVLTMKLRGEISDQVKSKFSLGLSLPQLCENFLKAAYDPRISGIYLHIDGLNCGWGKVEEIRRHILNFKKSGKFVVAYVPAFQEKEYYLACACEEIYAPPCAYFTLNGFSVQGSFLRGVLDKIGVEPQVERIGKYKSAGDQLARTTMSDENCEMLTALLDTIYTNWLDKVSSAKGKGREDIQNFINEGVYEVDRLKEEGFISNIIYDDEVTAMLKERLGVKAEKKLPTVDYRKYSRVRKWTVGISGGKECIAIIRASGNISRVKSQLSFSSSGIVAEEFIEQIRTVRESEEFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMATDAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAELIAADQRSFRPDEAELFAKSAQNAYKGFRDKAALSRSMTVEKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPQDQKVTVVEISKSSSSVPEILFGGLNSLTGVINALKMLLQELTFSGGVQTRMDGKIFRSLEGYPNANSILSIIKDYISSL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02355 676 Gene3D - 266 361 - -
Trre11g02355 676 Gene3D - 125 264 - -
Trre11g02355 676 Pfam Peptidase family S49 444 594 IPR002142 GO:0006508|GO:0008233
Trre11g02355 676 Pfam Peptidase family S49 193 345 IPR002142 GO:0006508|GO:0008233
Trre11g02355 676 CDD S49_SppA_67K_type 128 341 IPR047217 -
Trre11g02355 676 Gene3D - 522 644 - -
Trre11g02355 676 PANTHER PROTEASE 4 83 675 - -
Trre11g02355 676 SUPERFAMILY ClpP/crotonase 116 334 IPR029045 -
Trre11g02355 676 NCBIfam signal peptide peptidase SppA 376 589 IPR004635 GO:0006508|GO:0008233
Trre11g02355 676 Gene3D - 371 521 - -
Trre11g02355 676 PIRSF Protease_4_SppA 57 675 IPR004634 GO:0006465|GO:0008233|GO:0016020
Trre11g02355 676 CDD S49_Sppa_N_C 376 590 IPR047272 -
Trre11g02355 676 SUPERFAMILY ClpP/crotonase 366 581 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02355 Trre-Chr11 28140997 28150794 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02355 K04773 - gmx:100781522 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04336 15 53976550 53983261 Trre11g02355 11 28140997 28150794 PCT