Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04292 ATGGAATCCGAGAGTGGTGACAATACAACCAAAATCACCTCTCAACAACGTCGCGTCGGTTTACTATACGACCAGAGGATGTGTAACCACTTCAATCCAGACGACGATCGCCATCCAGAAACTCCTAATCGCATTAGGGCTATTTGGGACAAACTCCAAACCACCGGCATTACTGATCGATGTGTGATTTTGAAAGCGGTTGAGGCTGAAGACAAACATATATTAGCTGTGCATTCCAAAAAACATGTGAATCAAATTAAGACTATCAGCCGTAAAAGTTTTAATTTCAGGCGTAACCTTGCAGCTCGACTTGATTCTATCTACTTCAACGAAGGCTCAACTGAATCTGCTTATCTTGCTGCTGGTTCTGCAATCGAGGTTGTTAAGAAAGTGGCTAGCAAGGAATTGAATTCTGCTGCTGCTATTATTAGGCCTCCAGGTCATCATGCAGAGCCGGACGAAGCTATGGGATTTTGTTTGTTCAACAATGTTGCAATTGCTGCATCTTATCTCTTAAATGAAAATCCAGAATTTGGTGTAAAGAAAATTTTAATTGTTGACTGGGATGTCCATCATGGAAATGGTACTCAAAAAATGTTCTTGAATGATTCTCGAGTATTGTTCTTCTCTGTTCACAGGCATGAATATGGGAGTTTTTATCCAGCTGATGATAATGGATTTTATAACATGATTGGAGAAGGAGCTGGTGCTGGATACAATATAAATGTGCCATGGGAGAATGGAAGATGTGGTGATGCAGACTATTTTGCAGTGTGGGACCACATCTTACTCCCTGTCGCAAAAGAATTTAATCCAGACATAATTATAGTTTCTGCTGGATTTGATGCAGCTGCTGGAGACCCTTTAGGTGGATGCCGTGTCACACCATTTGGCTTTTCCCTTATGTTGAAAAAGTTGATGGATTTAGCTGAAGGTAGGATTGCACTGGTTTTAGAAGGAGGGTATAATCTCGATTCCATTGCAAAATCGATGCATGCTTGTTTGGAAGTTTTACTTGAAGACAAGCCTCTTGTGGGATCTTCAGAGGCCTATCCATTTGAGTCTACATGGCGTGTGATCCAAGCGGTTCGCAAGGAGTTGAGTCCCTTTTGGTCTACACTTGCGTCTGATTTGCCACAGAAATTAATCAGCCAAGTGGCACAACCTCCGCATACTCTTGTCTCAAGTTCTGACTCTGAGGATGGCGAAGCTCCACCCCAATTAAAAACTATTGCAGAGCTCCTTGAGGAGGTCATCAAACCACTTTCCAACCTCAACGTTTATGCAGATGAAGAGAATGCTGCTTCTTGTTCGTGGCGATCTGAATTGTCAAATGTTTACTTATGGTATGCTTCATATGGTTCAAACATGTGGATGCCAAGATTTGAATGCTACATAGCTGGTGGGCAGGTGGAAGGTATGCAGAAGCCGTGTTCTGGTTCAGTGAACAAAACTCTTCCATATCAGATCCTTTGGAAGACTTTCCCTTGTCATATATTTTTTGGTCGTGATTCGTCACATTCATGGGGTCCTGGAGGTGTTGCATTTCTTAATCCTGAGAGAAACTCTCAGCACAAGACCTACATGTGCATGTACAAAATTTCGCTAGAGCAGTTCAATGATATTTTATTTCAGGAAAATGGTTTAAGCCTTGATGCGGGCTCTTCTTTATTTGATATGACTACTCTGAATGCCATCTCTAACGAGGAGTTCAGTTCTCAGGAGGTTGTCAAGGATGGATGGTATGGTAATGTTGTCTACTTAGGAAAGGAGTGCGGCATTCCTATAGTTACTATGACGTGTTCGCCTCTTGATATTGAGGGCTTCAAATCTGGGAAGCTACCATTGCGTGCGCCTAATAAATCGTATGCCAATACCTTGATAAAAGGGTTGGTAGAGGGAGAACAGTTATTGGAGGCTGAAGCCATTGCTTACATAAATGCTGCTGCTAAATCACTATGA 1962 0.4215 MESESGDNTTKITSQQRRVGLLYDQRMCNHFNPDDDRHPETPNRIRAIWDKLQTTGITDRCVILKAVEAEDKHILAVHSKKHVNQIKTISRKSFNFRRNLAARLDSIYFNEGSTESAYLAAGSAIEVVKKVASKELNSAAAIIRPPGHHAEPDEAMGFCLFNNVAIAASYLLNENPEFGVKKILIVDWDVHHGNGTQKMFLNDSRVLFFSVHRHEYGSFYPADDNGFYNMIGEGAGAGYNINVPWENGRCGDADYFAVWDHILLPVAKEFNPDIIIVSAGFDAAAGDPLGGCRVTPFGFSLMLKKLMDLAEGRIALVLEGGYNLDSIAKSMHACLEVLLEDKPLVGSSEAYPFESTWRVIQAVRKELSPFWSTLASDLPQKLISQVAQPPHTLVSSSDSEDGEAPPQLKTIAELLEEVIKPLSNLNVYADEENAASCSWRSELSNVYLWYASYGSNMWMPRFECYIAGGQVEGMQKPCSGSVNKTLPYQILWKTFPCHIFFGRDSSHSWGPGGVAFLNPERNSQHKTYMCMYKISLEQFNDILFQENGLSLDAGSSLFDMTTLNAISNEEFSSQEVVKDGWYGNVVYLGKECGIPIVTMTCSPLDIEGFKSGKLPLRAPNKSYANTLIKGLVEGEQLLEAEAIAYINAAAKSL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04292 653 FunFam Histone deacetylase 15 12 389 - -
Trre15g04292 653 Pfam Histone deacetylase domain 38 337 IPR023801 -
Trre15g04292 653 PANTHER HISTONE DEACETYLASE 9-RELATED 17 391 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Trre15g04292 653 Gene3D Histone deacetylase domain 11 393 IPR037138 -
Trre15g04292 653 Gene3D - 435 652 - -
Trre15g04292 653 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Trre15g04292 653 PRINTS Histone deacetylase superfamily signature 272 282 IPR000286 -
Trre15g04292 653 SUPERFAMILY Arginase/deacetylase 16 371 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04292 Trre-Chr15 53486070 53494566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04292 K11406 - gmx:100788831 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04292 15 53486070 53494566 Trre15g04292 15 53486070 53494566 ECH
Trre15g04292 15 53486070 53494566 Trre5g01684 5 12211477 12212917 PCT