Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04187 ATGTCAAAAAAGCCAAGTGAAATTCTAGATGATCCCATGGAGGTAGAAGGAGAAACACAGAAGAATGTTGAACATCATGGAGATGACTCATGTTTGCTTATTCCTCAACTCGATCGTGATTCATCAATTAATTGCCTACTTCGATTGTCTAGATCTTATTATGGATCTATTGCTGCATTGAACCAAACTTTTCGGTCACTCATTAAGACTGGAGAATTGTATCAACTTAGGCAGAAAAAGGGAATAATTGAACATTGGGTTTACTTTTCTTGTGATGTCCTTAAATGGGAGGCCTTCGATCCAAATCGTGGTCGGTTGATGCAATTGCCTGAAATGAGTTCCAATACATGTTTTATGCTTTCAGACAAGGAGTCATTAGCTGTTGGTACAGAGCTACTTGTTTTTGGAAGGGAAATAACAGGTTCTGCCATCTATAAATATAGCATTCTGACAAATTCATGGTCGAAGGGAACGAAAATGAATACTCCAAGATGCTTGTTTGGTTCTGCAAGTCTGAGAGAAATAGCAATATTAGCTGGTGGTTGTGACCAATTTGGCAACACCTTGAGCTCTTCTGAGCTTTATAATTCAGATACTGGCACTTGGGAGATTCTTCCAAACATGAACACACCAAGGAGAATGTGTTCTGCTGTGTTTATGGATGGAAAATTTTATGTCCTCGGTGGGGTCGGAGTTGAAAAAACAACACAGTTAACCTGTGGTGAGGAGTTTGATTTGGAGACAAGAAGCTGGCGCAAAATACCAAACATGTGCCCACCTCGAAATGGAGGTGATGGTGTGAATTCGGTCGGTGGTGAGGCACCTCCTTTAATTGCAGTTGTTAACAATGTATTATTTGCTGCTGATTATGCACAACAAATAGTAAAAAGATATGTTAAAGATCAAAATGCATGGGTCACCATTGGAAGCCTTCCTAATCGAGTATCCTCTTTAAATGGATGGGGAATGGCCTTCAGATCATGCGGAGATAATTTAATTGTCATTGGAGGTCCTAGTCTTCATGGTGGAATGGTGACAGAAGTCAATGCTTGGGTAGTAGATGAAGGCGCACCACAGTGGAATTTGCTTGTCGTGATTCAATCAGGGAGTTTTGTGTTTAATTGTGCTGTGATGGGATGTTAA 1143 0.4033 MSKKPSEILDDPMEVEGETQKNVEHHGDDSCLLIPQLDRDSSINCLLRLSRSYYGSIAALNQTFRSLIKTGELYQLRQKKGIIEHWVYFSCDVLKWEAFDPNRGRLMQLPEMSSNTCFMLSDKESLAVGTELLVFGREITGSAIYKYSILTNSWSKGTKMNTPRCLFGSASLREIAILAGGCDQFGNTLSSSELYNSDTGTWEILPNMNTPRRMCSAVFMDGKFYVLGGVGVEKTTQLTCGEEFDLETRSWRKIPNMCPPRNGGDGVNSVGGEAPPLIAVVNNVLFAADYAQQIVKRYVKDQNAWVTIGSLPNRVSSLNGWGMAFRSCGDNLIVIGGPSLHGGMVTEVNAWVVDEGAPQWNLLVVIQSGSFVFNCAVMGC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04187 380 Pfam Kelch motif 211 257 IPR006652 GO:0005515
Trre15g04187 380 Pfam Kelch motif 163 209 IPR006652 GO:0005515
Trre15g04187 380 Gene3D - 74 378 IPR015915 GO:0005515
Trre15g04187 380 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 28 380 - -
Trre15g04187 380 SUPERFAMILY Kelch motif 93 377 IPR015915 GO:0005515
Trre15g04187 380 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g04187 380 FunFam F-box/kelch-repeat protein SKIP11 79 365 - -
Trre15g04187 380 SMART kelc_smart 175 222 IPR006652 GO:0005515
Trre15g04187 380 SMART kelc_smart 223 271 IPR006652 GO:0005515
Trre15g04187 380 SMART kelc_smart 131 174 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04187 Trre-Chr15 52507233 52508375 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04187 32 256 Miscellaneous Gene Families AT4G33900 28.070 1.12e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04187 - - cam:101513734 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04187 15 52507233 52508375 Trre15g04187 15 52507233 52508375 ECH
Trre9g02646 9 32881994 32885401 Trre15g04187 15 52507233 52508375 PCT